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TAFA2 (TAFA chemokine like family member 2)

Identity

Alias (NCBI)FAM19A2
TAFA-2
HGNC (Hugo) TAFA2
HGNC Alias symbTAFA-2
HGNC Previous nameFAM19A2
HGNC Previous namefamily with sequence similarity 19 member A2, C-C motif chemokine like
LocusID (NCBI) 338811
Atlas_Id 54306
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 61708248 and ends at 62192839 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM19A2 12q14.1 / KCNMB4 12q15PPM1H 12q14.1 / FAM19A2 12q14.1RAB12 18p11.22 / FAM19A2 12q14.1
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TAFA2   21589
Cards
Entrez_Gene (NCBI)TAFA2    TAFA chemokine like family member 2
AliasesFAM19A2; TAFA-2
GeneCards (Weizmann)TAFA2
Ensembl hg19 (Hinxton)ENSG00000198673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198673 [Gene_View]  ENSG00000198673 [Sequence]  chr12:61708248-62192839 [Contig_View]  TAFA2 [Vega]
ICGC DataPortalENSG00000198673
TCGA cBioPortalTAFA2
AceView (NCBI)TAFA2
Genatlas (Paris)TAFA2
SOURCE (Princeton)TAFA2
Genetics Home Reference (NIH)TAFA2
Genomic and cartography
GoldenPath hg38 (UCSC)TAFA2  -     chr12:61708248-62192839 -  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAFA2  -     12q14.1   [Description]    (hg19-Feb_2009)
GoldenPathTAFA2 - 12q14.1 [CytoView hg19]  TAFA2 - 12q14.1 [CytoView hg38]
ImmunoBaseENSG00000198673
Genome Data Viewer NCBITAFA2 [Mapview hg19]  
OMIM617496   
Gene and transcription
Genbank (Entrez)AK123580 AK128013 AL834160 AW161831 AY325115
RefSeq transcript (Entrez)NM_178539
Consensus coding sequences : CCDS (NCBI)TAFA2
Gene ExpressionTAFA2 [ NCBI-GEO ]   TAFA2 [ EBI - ARRAY_EXPRESS ]   TAFA2 [ SEEK ]   TAFA2 [ MEM ]
Gene Expression Viewer (FireBrowse)TAFA2 [ Firebrowse - Broad ]
GenevisibleExpression of TAFA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338811
GTEX Portal (Tissue expression)TAFA2
Human Protein AtlasENSG00000198673-TAFA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3H0
PhosPhoSitePlusQ8N3H0
Domains : Interpro (EBI)Chemokine-like_TAFA   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Conserved Domain (NCBI)TAFA2
SuperfamilyQ8N3H0
AlphaFold pdb e-kbQ8N3H0   
Human Protein Atlas [tissue]ENSG00000198673-TAFA2 [tissue]
HPRD16876
Protein Interaction databases
DIP (DOE-UCLA)Q8N3H0
IntAct (EBI)Q8N3H0
BioGRIDTAFA2
STRING (EMBL)TAFA2
ZODIACTAFA2
Ontologies - Pathways
QuickGOQ8N3H0
Ontology : AmiGOextracellular space  nucleus  cytoplasm  signal transduction  memory  visual learning  receptor ligand activity  
Ontology : EGO-EBIextracellular space  nucleus  cytoplasm  signal transduction  memory  visual learning  receptor ligand activity  
NDEx NetworkTAFA2
Atlas of Cancer Signalling NetworkTAFA2
Wikipedia pathwaysTAFA2
Orthology - Evolution
OrthoDB338811
GeneTree (enSembl)ENSG00000198673
Phylogenetic Trees/Animal Genes : TreeFamTAFA2
Homologs : HomoloGeneTAFA2
Homology/Alignments : Family Browser (UCSC)TAFA2
Gene fusions - Rearrangements
Fusion : MitelmanCTDSP2/FAM19A2 [12q14.1/12q14.1]  
Fusion : MitelmanFAM19A2/KCNMB4 [12q14.1/12q15]  
Fusion : MitelmanPPM1H/FAM19A2 [12q14.1/12q14.1]  
Fusion : MitelmanRAB12/FAM19A2 [18p11.22/12q14.1]  
Fusion : QuiverTAFA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAFA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAFA2
dbVarTAFA2
ClinVarTAFA2
MonarchTAFA2
1000_GenomesTAFA2 
Exome Variant ServerTAFA2
GNOMAD BrowserENSG00000198673
Varsome BrowserTAFA2
ACMGTAFA2 variants
VarityQ8N3H0
Genomic Variants (DGV)TAFA2 [DGVbeta]
DECIPHERTAFA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAFA2 
Mutations
ICGC Data PortalTAFA2 
TCGA Data PortalTAFA2 
Broad Tumor PortalTAFA2
OASIS PortalTAFA2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAFA2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAFA2
DgiDB (Drug Gene Interaction Database)TAFA2
DoCM (Curated mutations)TAFA2
CIViC (Clinical Interpretations of Variants in Cancer)TAFA2
Cancer3DTAFA2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617496   
Orphanet
DisGeNETTAFA2
MedgenTAFA2
Genetic Testing Registry TAFA2
NextProtQ8N3H0 [Medical]
GENETestsTAFA2
Target ValidationTAFA2
Huge Navigator TAFA2 [HugePedia]
ClinGenTAFA2
Clinical trials, drugs, therapy
MyCancerGenomeTAFA2
Protein Interactions : CTDTAFA2
Pharm GKB GenePA134974674
PharosQ8N3H0
Clinical trialTAFA2
Miscellaneous
canSAR (ICR)TAFA2
HarmonizomeTAFA2
DataMed IndexTAFA2
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAFA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:12 CEST 2021

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