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TAFA3 (TAFA chemokine like family member 3)

Identity

Alias (NCBI)FAM19A3
TAFA-3
HGNC (Hugo) TAFA3
HGNC Alias symbTAFA-3
HGNC Previous namefamily with sequence similarity 19 (chemokine (C-C motif)-like), member A3
LocusID (NCBI) 284467
Atlas_Id 63112
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 112720567 and ends at 112727234 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TAFA3   21590
Cards
Entrez_Gene (NCBI)TAFA3    TAFA chemokine like family member 3
AliasesFAM19A3; TAFA-3
GeneCards (Weizmann)TAFA3
Ensembl hg19 (Hinxton)ENSG00000184599 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184599 [Gene_View]  ENSG00000184599 [Sequence]  chr1:112720567-112727234 [Contig_View]  TAFA3 [Vega]
ICGC DataPortalENSG00000184599
TCGA cBioPortalTAFA3
AceView (NCBI)TAFA3
Genatlas (Paris)TAFA3
SOURCE (Princeton)TAFA3
Genetics Home Reference (NIH)TAFA3
Genomic and cartography
GoldenPath hg38 (UCSC)TAFA3  -     chr1:112720567-112727234 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAFA3  -     1p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTAFA3 - 1p13.2 [CytoView hg19]  TAFA3 - 1p13.2 [CytoView hg38]
ImmunoBaseENSG00000184599
Genome Data Viewer NCBITAFA3 [Mapview hg19]  
OMIM617497   
Gene and transcription
Genbank (Entrez)AY325116 AY325119 BC112268 BC117479 BC143949
RefSeq transcript (Entrez)NM_001004440 NM_182759
Consensus coding sequences : CCDS (NCBI)TAFA3
Gene ExpressionTAFA3 [ NCBI-GEO ]   TAFA3 [ EBI - ARRAY_EXPRESS ]   TAFA3 [ SEEK ]   TAFA3 [ MEM ]
Gene Expression Viewer (FireBrowse)TAFA3 [ Firebrowse - Broad ]
GenevisibleExpression of TAFA3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284467
GTEX Portal (Tissue expression)TAFA3
Human Protein AtlasENSG00000184599-TAFA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5A8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5A8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5A8
PhosPhoSitePlusQ7Z5A8
Domains : Interpro (EBI)Chemokine-like_TAFA   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Conserved Domain (NCBI)TAFA3
SuperfamilyQ7Z5A8
AlphaFold pdb e-kbQ7Z5A8   
Human Protein Atlas [tissue]ENSG00000184599-TAFA3 [tissue]
HPRD16877
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5A8
IntAct (EBI)Q7Z5A8
BioGRIDTAFA3
STRING (EMBL)TAFA3
ZODIACTAFA3
Ontologies - Pathways
QuickGOQ7Z5A8
Ontology : AmiGOextracellular space  extracellular space  signal transduction  neuroblast differentiation  receptor ligand activity  regulation of neuroblast proliferation  negative regulation of microglial cell activation  negative regulation of microglial cell activation  positive regulation of microglial cell activation  positive regulation of microglial cell activation  
Ontology : EGO-EBIextracellular space  extracellular space  signal transduction  neuroblast differentiation  receptor ligand activity  regulation of neuroblast proliferation  negative regulation of microglial cell activation  negative regulation of microglial cell activation  positive regulation of microglial cell activation  positive regulation of microglial cell activation  
NDEx NetworkTAFA3
Atlas of Cancer Signalling NetworkTAFA3
Wikipedia pathwaysTAFA3
Orthology - Evolution
OrthoDB284467
GeneTree (enSembl)ENSG00000184599
Phylogenetic Trees/Animal Genes : TreeFamTAFA3
Homologs : HomoloGeneTAFA3
Homology/Alignments : Family Browser (UCSC)TAFA3
Gene fusions - Rearrangements
Fusion : QuiverTAFA3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAFA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAFA3
dbVarTAFA3
ClinVarTAFA3
MonarchTAFA3
1000_GenomesTAFA3 
Exome Variant ServerTAFA3
GNOMAD BrowserENSG00000184599
Varsome BrowserTAFA3
ACMGTAFA3 variants
VarityQ7Z5A8
Genomic Variants (DGV)TAFA3 [DGVbeta]
DECIPHERTAFA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAFA3 
Mutations
ICGC Data PortalTAFA3 
TCGA Data PortalTAFA3 
Broad Tumor PortalTAFA3
OASIS PortalTAFA3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAFA3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAFA3
DgiDB (Drug Gene Interaction Database)TAFA3
DoCM (Curated mutations)TAFA3
CIViC (Clinical Interpretations of Variants in Cancer)TAFA3
Cancer3DTAFA3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617497   
Orphanet
DisGeNETTAFA3
MedgenTAFA3
Genetic Testing Registry TAFA3
NextProtQ7Z5A8 [Medical]
GENETestsTAFA3
Target ValidationTAFA3
Huge Navigator TAFA3 [HugePedia]
ClinGenTAFA3
Clinical trials, drugs, therapy
MyCancerGenomeTAFA3
Protein Interactions : CTDTAFA3
Pharm GKB GenePA134899352
PharosQ7Z5A8
Clinical trialTAFA3
Miscellaneous
canSAR (ICR)TAFA3
HarmonizomeTAFA3
DataMed IndexTAFA3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAFA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:48 CEST 2021

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