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TAFA4 (TAFA chemokine like family member 4)

Identity

Alias (NCBI)FAM19A4
TAFA-4
HGNC (Hugo) TAFA4
HGNC Alias symbTAFA-4
HGNC Previous nameFAM19A4
HGNC Previous namefamily with sequence similarity 19 member A4, C-C motif chemokine like
LocusID (NCBI) 151647
Atlas_Id 55341
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 68731766 and ends at 68932547 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM19A4 3p14.1 / CACNA2D3 3p21.1FHIT 3p14.2 / FAM19A4 3p14.1
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TAFA4   21591
Cards
Entrez_Gene (NCBI)TAFA4    TAFA chemokine like family member 4
AliasesFAM19A4; TAFA-4
GeneCards (Weizmann)TAFA4
Ensembl hg19 (Hinxton)ENSG00000163377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163377 [Gene_View]  ENSG00000163377 [Sequence]  chr3:68731766-68932547 [Contig_View]  TAFA4 [Vega]
ICGC DataPortalENSG00000163377
TCGA cBioPortalTAFA4
AceView (NCBI)TAFA4
Genatlas (Paris)TAFA4
SOURCE (Princeton)TAFA4
Genetics Home Reference (NIH)TAFA4
Genomic and cartography
GoldenPath hg38 (UCSC)TAFA4  -     chr3:68731766-68932547 -  3p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAFA4  -     3p14.1   [Description]    (hg19-Feb_2009)
GoldenPathTAFA4 - 3p14.1 [CytoView hg19]  TAFA4 - 3p14.1 [CytoView hg38]
ImmunoBaseENSG00000163377
Genome Data Viewer NCBITAFA4 [Mapview hg19]  
OMIM617498   
Gene and transcription
Genbank (Entrez)AK057890 AY325117 BC031566 DA017279
RefSeq transcript (Entrez)NM_001005527 NM_182522
Consensus coding sequences : CCDS (NCBI)TAFA4
Gene ExpressionTAFA4 [ NCBI-GEO ]   TAFA4 [ EBI - ARRAY_EXPRESS ]   TAFA4 [ SEEK ]   TAFA4 [ MEM ]
Gene Expression Viewer (FireBrowse)TAFA4 [ Firebrowse - Broad ]
GenevisibleExpression of TAFA4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151647
GTEX Portal (Tissue expression)TAFA4
Human Protein AtlasENSG00000163377-TAFA4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LR4
PhosPhoSitePlusQ96LR4
Domains : Interpro (EBI)Chemokine-like_TAFA   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Conserved Domain (NCBI)TAFA4
SuperfamilyQ96LR4
AlphaFold pdb e-kbQ96LR4   
Human Protein Atlas [tissue]ENSG00000163377-TAFA4 [tissue]
HPRD08343
Protein Interaction databases
DIP (DOE-UCLA)Q96LR4
IntAct (EBI)Q96LR4
BioGRIDTAFA4
STRING (EMBL)TAFA4
ZODIACTAFA4
Ontologies - Pathways
QuickGOQ96LR4
Ontology : AmiGOprotein binding  extracellular space  extracellular space  extracellular space  phagocytosis  phagocytosis  signal transduction  regulation of signaling receptor activity  regulation of membrane potential  superoxide anion generation  receptor ligand activity  receptor ligand activity  macrophage chemotaxis  macrophage chemotaxis  regulation of sensory perception of pain  
Ontology : EGO-EBIprotein binding  extracellular space  extracellular space  extracellular space  phagocytosis  phagocytosis  signal transduction  regulation of signaling receptor activity  regulation of membrane potential  superoxide anion generation  receptor ligand activity  receptor ligand activity  macrophage chemotaxis  macrophage chemotaxis  regulation of sensory perception of pain  
NDEx NetworkTAFA4
Atlas of Cancer Signalling NetworkTAFA4
Wikipedia pathwaysTAFA4
Orthology - Evolution
OrthoDB151647
GeneTree (enSembl)ENSG00000163377
Phylogenetic Trees/Animal Genes : TreeFamTAFA4
Homologs : HomoloGeneTAFA4
Homology/Alignments : Family Browser (UCSC)TAFA4
Gene fusions - Rearrangements
Fusion : MitelmanFAM19A4/CACNA2D3 [3p14.1/3p21.1]  
Fusion : MitelmanFHIT/FAM19A4 [3p14.2/3p14.1]  
Fusion : QuiverTAFA4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAFA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAFA4
dbVarTAFA4
ClinVarTAFA4
MonarchTAFA4
1000_GenomesTAFA4 
Exome Variant ServerTAFA4
GNOMAD BrowserENSG00000163377
Varsome BrowserTAFA4
ACMGTAFA4 variants
VarityQ96LR4
Genomic Variants (DGV)TAFA4 [DGVbeta]
DECIPHERTAFA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAFA4 
Mutations
ICGC Data PortalTAFA4 
TCGA Data PortalTAFA4 
Broad Tumor PortalTAFA4
OASIS PortalTAFA4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAFA4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAFA4
DgiDB (Drug Gene Interaction Database)TAFA4
DoCM (Curated mutations)TAFA4
CIViC (Clinical Interpretations of Variants in Cancer)TAFA4
Cancer3DTAFA4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617498   
Orphanet
DisGeNETTAFA4
MedgenTAFA4
Genetic Testing Registry TAFA4
NextProtQ96LR4 [Medical]
GENETestsTAFA4
Target ValidationTAFA4
Huge Navigator TAFA4 [HugePedia]
ClinGenTAFA4
Clinical trials, drugs, therapy
MyCancerGenomeTAFA4
Protein Interactions : CTDTAFA4
Pharm GKB GenePA134873006
PharosQ96LR4
Clinical trialTAFA4
Miscellaneous
canSAR (ICR)TAFA4
HarmonizomeTAFA4
DataMed IndexTAFA4
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAFA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:12 CEST 2021

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