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TAFA5 (TAFA chemokine like family member 5)

Identity

Alias (NCBI)FAM19A5
QLLK5208
TAFA-5
UNQ5208
HGNC (Hugo) TAFA5
HGNC Alias symbTAFA-5
HGNC Previous namefamily with sequence similarity 19 (chemokine (C-C motif)-like), member A5
LocusID (NCBI) 25817
Atlas_Id 63114
Location 22q13.32  [Link to chromosome band 22q13]
Location_base_pair Starts at 48576340 and ends at 48751932 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM19A5 ZFP2FAM19A5 C14orf49ARFGEF2 FAM19A5
PI4KA FAM19A5
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TAFA5   21592
Cards
Entrez_Gene (NCBI)TAFA5    TAFA chemokine like family member 5
AliasesFAM19A5; QLLK5208; TAFA-5; UNQ5208
GeneCards (Weizmann)TAFA5
Ensembl hg19 (Hinxton)ENSG00000219438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219438 [Gene_View]  ENSG00000219438 [Sequence]  chr22:48576340-48751932 [Contig_View]  TAFA5 [Vega]
ICGC DataPortalENSG00000219438
TCGA cBioPortalTAFA5
AceView (NCBI)TAFA5
Genatlas (Paris)TAFA5
SOURCE (Princeton)TAFA5
Genetics Home Reference (NIH)TAFA5
Genomic and cartography
GoldenPath hg38 (UCSC)TAFA5  -     chr22:48576340-48751932 +  22q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAFA5  -     22q13.32   [Description]    (hg19-Feb_2009)
GoldenPathTAFA5 - 22q13.32 [CytoView hg19]  TAFA5 - 22q13.32 [CytoView hg38]
ImmunoBaseENSG00000219438
Genome Data Viewer NCBITAFA5 [Mapview hg19]  
OMIM617499   
Gene and transcription
Genbank (Entrez)AF131851 AK123443 AK125256 AY325118 AY358847
RefSeq transcript (Entrez)NM_001082967 NM_015381
Consensus coding sequences : CCDS (NCBI)TAFA5
Gene ExpressionTAFA5 [ NCBI-GEO ]   TAFA5 [ EBI - ARRAY_EXPRESS ]   TAFA5 [ SEEK ]   TAFA5 [ MEM ]
Gene Expression Viewer (FireBrowse)TAFA5 [ Firebrowse - Broad ]
GenevisibleExpression of TAFA5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25817
GTEX Portal (Tissue expression)TAFA5
Human Protein AtlasENSG00000219438-TAFA5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5A7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5A7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5A7
PhosPhoSitePlusQ7Z5A7
Domains : Interpro (EBI)Chemokine-like_TAFA    TAFA-5   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Conserved Domain (NCBI)TAFA5
SuperfamilyQ7Z5A7
AlphaFold pdb e-kbQ7Z5A7   
Human Protein Atlas [tissue]ENSG00000219438-TAFA5 [tissue]
HPRD13295
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5A7
IntAct (EBI)Q7Z5A7
BioGRIDTAFA5
STRING (EMBL)TAFA5
ZODIACTAFA5
Ontologies - Pathways
QuickGOQ7Z5A7
Ontology : AmiGOG protein-coupled receptor binding  cytokine activity  extracellular space  nucleus  cytoplasm  G protein-coupled receptor signaling pathway  receptor ligand activity  negative regulation of vascular wound healing  negative regulation of vascular associated smooth muscle cell proliferation  negative regulation of vascular associated smooth muscle cell proliferation  negative regulation of vascular associated smooth muscle cell migration  
Ontology : EGO-EBIG protein-coupled receptor binding  cytokine activity  extracellular space  nucleus  cytoplasm  G protein-coupled receptor signaling pathway  receptor ligand activity  negative regulation of vascular wound healing  negative regulation of vascular associated smooth muscle cell proliferation  negative regulation of vascular associated smooth muscle cell proliferation  negative regulation of vascular associated smooth muscle cell migration  
NDEx NetworkTAFA5
Atlas of Cancer Signalling NetworkTAFA5
Wikipedia pathwaysTAFA5
Orthology - Evolution
OrthoDB25817
GeneTree (enSembl)ENSG00000219438
Phylogenetic Trees/Animal Genes : TreeFamTAFA5
Homologs : HomoloGeneTAFA5
Homology/Alignments : Family Browser (UCSC)TAFA5
Gene fusions - Rearrangements
Fusion : QuiverTAFA5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAFA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAFA5
dbVarTAFA5
ClinVarTAFA5
MonarchTAFA5
1000_GenomesTAFA5 
Exome Variant ServerTAFA5
GNOMAD BrowserENSG00000219438
Varsome BrowserTAFA5
ACMGTAFA5 variants
VarityQ7Z5A7
Genomic Variants (DGV)TAFA5 [DGVbeta]
DECIPHERTAFA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAFA5 
Mutations
ICGC Data PortalTAFA5 
TCGA Data PortalTAFA5 
Broad Tumor PortalTAFA5
OASIS PortalTAFA5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAFA5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAFA5
DgiDB (Drug Gene Interaction Database)TAFA5
DoCM (Curated mutations)TAFA5
CIViC (Clinical Interpretations of Variants in Cancer)TAFA5
Cancer3DTAFA5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617499   
Orphanet
DisGeNETTAFA5
MedgenTAFA5
Genetic Testing Registry TAFA5
NextProtQ7Z5A7 [Medical]
GENETestsTAFA5
Target ValidationTAFA5
Huge Navigator TAFA5 [HugePedia]
ClinGenTAFA5
Clinical trials, drugs, therapy
MyCancerGenomeTAFA5
Protein Interactions : CTDTAFA5
Pharm GKB GenePA134887312
PharosQ7Z5A7
Clinical trialTAFA5
Miscellaneous
canSAR (ICR)TAFA5
HarmonizomeTAFA5
DataMed IndexTAFA5
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAFA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:48 CEST 2021

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