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TAGAP (T-cell activation RhoGTPase activating protein)

Identity

Alias_namesT-cell activation GTPase activating protein
Alias_symbol (synonym)FLJ32631
IDDM21
ARHGAP47
Other aliasFKSG15
TAGAP1
HGNC (Hugo) TAGAP
LocusID (NCBI) 117289
Atlas_Id 74474
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 159034469 and ends at 159042353 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAGAP   15669
Cards
Entrez_Gene (NCBI)TAGAP  117289  T-cell activation RhoGTPase activating protein
AliasesARHGAP47; FKSG15; IDDM21; TAGAP1
GeneCards (Weizmann)TAGAP
Ensembl hg19 (Hinxton)ENSG00000164691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164691 [Gene_View]  chr6:159034469-159042353 [Contig_View]  TAGAP [Vega]
ICGC DataPortalENSG00000164691
TCGA cBioPortalTAGAP
AceView (NCBI)TAGAP
Genatlas (Paris)TAGAP
WikiGenes117289
SOURCE (Princeton)TAGAP
Genetics Home Reference (NIH)TAGAP
Genomic and cartography
GoldenPath hg38 (UCSC)TAGAP  -     chr6:159034469-159042353 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAGAP  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblTAGAP - 6q25.3 [CytoView hg19]  TAGAP - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBITAGAP [Mapview hg19]  TAGAP [Mapview hg38]
OMIM609667   
Gene and transcription
Genbank (Entrez)AF385429 AF385430 AK025272 AK057193 AK097090
RefSeq transcript (Entrez)NM_001278733 NM_054114 NM_138810 NM_152133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAGAP
Cluster EST : UnigeneHs.529984 [ NCBI ]
CGAP (NCI)Hs.529984
Alternative Splicing GalleryENSG00000164691
Gene ExpressionTAGAP [ NCBI-GEO ]   TAGAP [ EBI - ARRAY_EXPRESS ]   TAGAP [ SEEK ]   TAGAP [ MEM ]
Gene Expression Viewer (FireBrowse)TAGAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117289
GTEX Portal (Tissue expression)TAGAP
Human Protein AtlasENSG00000164691-TAGAP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N103   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N103  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N103
Splice isoforms : SwissVarQ8N103
PhosPhoSitePlusQ8N103
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)TAGAP
DMDM Disease mutations117289
Blocks (Seattle)TAGAP
SuperfamilyQ8N103
Human Protein Atlas [tissue]ENSG00000164691-TAGAP [tissue]
Peptide AtlasQ8N103
HPRD18143
IPIIPI00166033   IPI00182659   IPI00651776   IPI00160359   
Protein Interaction databases
DIP (DOE-UCLA)Q8N103
IntAct (EBI)Q8N103
FunCoupENSG00000164691
BioGRIDTAGAP
STRING (EMBL)TAGAP
ZODIACTAGAP
Ontologies - Pathways
QuickGOQ8N103
Ontology : AmiGOguanyl-nucleotide exchange factor activity  GTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIguanyl-nucleotide exchange factor activity  GTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkTAGAP
Atlas of Cancer Signalling NetworkTAGAP
Wikipedia pathwaysTAGAP
Orthology - Evolution
OrthoDB117289
GeneTree (enSembl)ENSG00000164691
Phylogenetic Trees/Animal Genes : TreeFamTAGAP
HOVERGENQ8N103
HOGENOMQ8N103
Homologs : HomoloGeneTAGAP
Homology/Alignments : Family Browser (UCSC)TAGAP
Gene fusions - Rearrangements
Fusion : QuiverTAGAP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAGAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAGAP
dbVarTAGAP
ClinVarTAGAP
1000_GenomesTAGAP 
Exome Variant ServerTAGAP
ExAC (Exome Aggregation Consortium)ENSG00000164691
GNOMAD BrowserENSG00000164691
Genetic variants : HAPMAP117289
Genomic Variants (DGV)TAGAP [DGVbeta]
DECIPHERTAGAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAGAP 
Mutations
ICGC Data PortalTAGAP 
TCGA Data PortalTAGAP 
Broad Tumor PortalTAGAP
OASIS PortalTAGAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAGAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAGAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAGAP
DgiDB (Drug Gene Interaction Database)TAGAP
DoCM (Curated mutations)TAGAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAGAP (select a term)
intoGenTAGAP
Cancer3DTAGAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609667   
Orphanet
DisGeNETTAGAP
MedgenTAGAP
Genetic Testing Registry TAGAP
NextProtQ8N103 [Medical]
TSGene117289
GENETestsTAGAP
Target ValidationTAGAP
Huge Navigator TAGAP [HugePedia]
snp3D : Map Gene to Disease117289
BioCentury BCIQTAGAP
ClinGenTAGAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117289
Chemical/Pharm GKB GenePA38016
Clinical trialTAGAP
Miscellaneous
canSAR (ICR)TAGAP (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAGAP
EVEXTAGAP
GoPubMedTAGAP
iHOPTAGAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:54:55 CET 2018

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