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TAGLN2 (transgelin 2)

Identity

Alias_symbol (synonym)KIAA0120
HA1756
Other alias
HGNC (Hugo) TAGLN2
LocusID (NCBI) 8407
Atlas_Id 51377
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159918107 and ends at 159924551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C14orf37 (14q23.1) / TAGLN2 (1q23.2)MAGOHB (12p13.2) / TAGLN2 (1q23.2)PPP4R3B (2p16.1) / TAGLN2 (1q23.2)
SOD1 (21q22.11) / TAGLN2 (1q23.2)TAGLN2 (1q23.2) / LPP (3q28)TAGLN2 (1q23.2) / PPP1R15A (19q13.33)
TM9SF3 (10q24.1) / TAGLN2 (1q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAGLN2   11554
Cards
Entrez_Gene (NCBI)TAGLN2  8407  transgelin 2
AliasesHA1756
GeneCards (Weizmann)TAGLN2
Ensembl hg19 (Hinxton)ENSG00000158710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158710 [Gene_View]  chr1:159918107-159924551 [Contig_View]  TAGLN2 [Vega]
ICGC DataPortalENSG00000158710
TCGA cBioPortalTAGLN2
AceView (NCBI)TAGLN2
Genatlas (Paris)TAGLN2
WikiGenes8407
SOURCE (Princeton)TAGLN2
Genetics Home Reference (NIH)TAGLN2
Genomic and cartography
GoldenPath hg38 (UCSC)TAGLN2  -     chr1:159918107-159924551 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAGLN2  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblTAGLN2 - 1q23.2 [CytoView hg19]  TAGLN2 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBITAGLN2 [Mapview hg19]  TAGLN2 [Mapview hg38]
OMIM604634   
Gene and transcription
Genbank (Entrez)AI270594 AJ844624 AK291562 AK298654 AY007127
RefSeq transcript (Entrez)NM_001277223 NM_001277224 NM_003564
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAGLN2
Cluster EST : UnigeneHs.517168 [ NCBI ]
CGAP (NCI)Hs.517168
Alternative Splicing GalleryENSG00000158710
Gene ExpressionTAGLN2 [ NCBI-GEO ]   TAGLN2 [ EBI - ARRAY_EXPRESS ]   TAGLN2 [ SEEK ]   TAGLN2 [ MEM ]
Gene Expression Viewer (FireBrowse)TAGLN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8407
GTEX Portal (Tissue expression)TAGLN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP37802   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP37802  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP37802
Splice isoforms : SwissVarP37802
PhosPhoSitePlusP37802
Domaine pattern : Prosite (Expaxy)CALPONIN_1 (PS01052)    CALPONIN_2 (PS51122)    CH (PS50021)   
Domains : Interpro (EBI)Calponin_repeat    CH-domain    SM22_calponin   
Domain families : Pfam (Sanger)Calponin (PF00402)    CH (PF00307)   
Domain families : Pfam (NCBI)pfam00402    pfam00307   
Domain families : Smart (EMBL)CH (SM00033)  
Conserved Domain (NCBI)TAGLN2
DMDM Disease mutations8407
Blocks (Seattle)TAGLN2
PDB (SRS)1WYM   
PDB (PDBSum)1WYM   
PDB (IMB)1WYM   
PDB (RSDB)1WYM   
Structural Biology KnowledgeBase1WYM   
SCOP (Structural Classification of Proteins)1WYM   
CATH (Classification of proteins structures)1WYM   
SuperfamilyP37802
Human Protein AtlasENSG00000158710
Peptide AtlasP37802
HPRD06864
IPIIPI00550363   IPI00647915   IPI00644531   
Protein Interaction databases
DIP (DOE-UCLA)P37802
IntAct (EBI)P37802
FunCoupENSG00000158710
BioGRIDTAGLN2
STRING (EMBL)TAGLN2
ZODIACTAGLN2
Ontologies - Pathways
QuickGOP37802
Ontology : AmiGOplatelet degranulation  protein binding  extracellular region  cytosol  epithelial cell differentiation  vesicle  cadherin binding  extracellular exosome  
Ontology : EGO-EBIplatelet degranulation  protein binding  extracellular region  cytosol  epithelial cell differentiation  vesicle  cadherin binding  extracellular exosome  
NDEx NetworkTAGLN2
Atlas of Cancer Signalling NetworkTAGLN2
Wikipedia pathwaysTAGLN2
Orthology - Evolution
OrthoDB8407
GeneTree (enSembl)ENSG00000158710
Phylogenetic Trees/Animal Genes : TreeFamTAGLN2
HOVERGENP37802
HOGENOMP37802
Homologs : HomoloGeneTAGLN2
Homology/Alignments : Family Browser (UCSC)TAGLN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAGLN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAGLN2
dbVarTAGLN2
ClinVarTAGLN2
1000_GenomesTAGLN2 
Exome Variant ServerTAGLN2
ExAC (Exome Aggregation Consortium)TAGLN2 (select the gene name)
Genetic variants : HAPMAP8407
Genomic Variants (DGV)TAGLN2 [DGVbeta]
DECIPHERTAGLN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAGLN2 
Mutations
ICGC Data PortalTAGLN2 
TCGA Data PortalTAGLN2 
Broad Tumor PortalTAGLN2
OASIS PortalTAGLN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAGLN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAGLN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAGLN2
DgiDB (Drug Gene Interaction Database)TAGLN2
DoCM (Curated mutations)TAGLN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAGLN2 (select a term)
intoGenTAGLN2
Cancer3DTAGLN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604634   
Orphanet
MedgenTAGLN2
Genetic Testing Registry TAGLN2
NextProtP37802 [Medical]
TSGene8407
GENETestsTAGLN2
Huge Navigator TAGLN2 [HugePedia]
snp3D : Map Gene to Disease8407
BioCentury BCIQTAGLN2
ClinGenTAGLN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8407
Chemical/Pharm GKB GenePA36325
Clinical trialTAGLN2
Miscellaneous
canSAR (ICR)TAGLN2 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAGLN2
EVEXTAGLN2
GoPubMedTAGLN2
iHOPTAGLN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:10 CEST 2017

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