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TAGLN3 (transgelin 3)

Identity

Alias_symbol (synonym)NP25
NP22
Other aliasNP24
HGNC (Hugo) TAGLN3
LocusID (NCBI) 29114
Atlas_Id 74475
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 111998739 and ends at 112013888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAGLN3 (3q13.2) / KDM3B (5q31.2)TAGLN3 (3q13.2) / SNRPD2 (19q13.32)TAGLN3 (3q13.2) / TAGLN3 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAGLN3   29868
Cards
Entrez_Gene (NCBI)TAGLN3  29114  transgelin 3
AliasesNP22; NP24; NP25
GeneCards (Weizmann)TAGLN3
Ensembl hg19 (Hinxton)ENSG00000144834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144834 [Gene_View]  chr3:111998739-112013888 [Contig_View]  TAGLN3 [Vega]
ICGC DataPortalENSG00000144834
TCGA cBioPortalTAGLN3
AceView (NCBI)TAGLN3
Genatlas (Paris)TAGLN3
WikiGenes29114
SOURCE (Princeton)TAGLN3
Genetics Home Reference (NIH)TAGLN3
Genomic and cartography
GoldenPath hg38 (UCSC)TAGLN3  -     chr3:111998739-112013888 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAGLN3  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblTAGLN3 - 3q13.2 [CytoView hg19]  TAGLN3 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBITAGLN3 [Mapview hg19]  TAGLN3 [Mapview hg38]
OMIM607953   
Gene and transcription
Genbank (Entrez)AF087855 AF112201 AF303058 AK315289 BC015329
RefSeq transcript (Entrez)NM_001008272 NM_001008273 NM_013259
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAGLN3
Cluster EST : UnigeneHs.169330 [ NCBI ]
CGAP (NCI)Hs.169330
Alternative Splicing GalleryENSG00000144834
Gene ExpressionTAGLN3 [ NCBI-GEO ]   TAGLN3 [ EBI - ARRAY_EXPRESS ]   TAGLN3 [ SEEK ]   TAGLN3 [ MEM ]
Gene Expression Viewer (FireBrowse)TAGLN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29114
GTEX Portal (Tissue expression)TAGLN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI15
Splice isoforms : SwissVarQ9UI15
PhosPhoSitePlusQ9UI15
Domaine pattern : Prosite (Expaxy)CALPONIN_1 (PS01052)    CALPONIN_2 (PS51122)    CH (PS50021)   
Domains : Interpro (EBI)Calponin_repeat    CH-domain    SM22_calponin    TAGLN3   
Domain families : Pfam (Sanger)Calponin (PF00402)    CH (PF00307)   
Domain families : Pfam (NCBI)pfam00402    pfam00307   
Domain families : Smart (EMBL)CH (SM00033)  
Conserved Domain (NCBI)TAGLN3
DMDM Disease mutations29114
Blocks (Seattle)TAGLN3
SuperfamilyQ9UI15
Human Protein AtlasENSG00000144834
Peptide AtlasQ9UI15
HPRD12136
IPIIPI00005981   IPI01013282   IPI00947338   IPI00945471   IPI00947530   
Protein Interaction databases
DIP (DOE-UCLA)Q9UI15
IntAct (EBI)Q9UI15
FunCoupENSG00000144834
BioGRIDTAGLN3
STRING (EMBL)TAGLN3
ZODIACTAGLN3
Ontologies - Pathways
QuickGOQ9UI15
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  central nervous system development  myelin sheath  actin filament binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  central nervous system development  myelin sheath  actin filament binding  
NDEx NetworkTAGLN3
Atlas of Cancer Signalling NetworkTAGLN3
Wikipedia pathwaysTAGLN3
Orthology - Evolution
OrthoDB29114
GeneTree (enSembl)ENSG00000144834
Phylogenetic Trees/Animal Genes : TreeFamTAGLN3
HOVERGENQ9UI15
HOGENOMQ9UI15
Homologs : HomoloGeneTAGLN3
Homology/Alignments : Family Browser (UCSC)TAGLN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAGLN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAGLN3
dbVarTAGLN3
ClinVarTAGLN3
1000_GenomesTAGLN3 
Exome Variant ServerTAGLN3
ExAC (Exome Aggregation Consortium)TAGLN3 (select the gene name)
Genetic variants : HAPMAP29114
Genomic Variants (DGV)TAGLN3 [DGVbeta]
DECIPHERTAGLN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAGLN3 
Mutations
ICGC Data PortalTAGLN3 
TCGA Data PortalTAGLN3 
Broad Tumor PortalTAGLN3
OASIS PortalTAGLN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAGLN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAGLN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAGLN3
DgiDB (Drug Gene Interaction Database)TAGLN3
DoCM (Curated mutations)TAGLN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAGLN3 (select a term)
intoGenTAGLN3
Cancer3DTAGLN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607953   
Orphanet
MedgenTAGLN3
Genetic Testing Registry TAGLN3
NextProtQ9UI15 [Medical]
TSGene29114
GENETestsTAGLN3
Target ValidationTAGLN3
Huge Navigator TAGLN3 [HugePedia]
snp3D : Map Gene to Disease29114
BioCentury BCIQTAGLN3
ClinGenTAGLN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29114
Chemical/Pharm GKB GenePA134896732
Clinical trialTAGLN3
Miscellaneous
canSAR (ICR)TAGLN3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAGLN3
EVEXTAGLN3
GoPubMedTAGLN3
iHOPTAGLN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:56 CEST 2017

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