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TAGLN3 (transgelin 3)

Identity

Alias (NCBI)NP22
NP24
NP25
HGNC (Hugo) TAGLN3
HGNC Alias symbNP25
NP22
LocusID (NCBI) 29114
Atlas_Id 74475
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 111998739 and ends at 112013888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAGLN3 (3q13.2) / KDM3B (5q31.2)TAGLN3 (3q13.2) / SNRPD2 (19q13.32)TAGLN3 (3q13.2) / TAGLN3 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAGLN3   29868
Cards
Entrez_Gene (NCBI)TAGLN3    transgelin 3
AliasesNP22; NP24; NP25
GeneCards (Weizmann)TAGLN3
Ensembl hg19 (Hinxton)ENSG00000144834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144834 [Gene_View]  ENSG00000144834 [Sequence]  chr3:111998739-112013888 [Contig_View]  TAGLN3 [Vega]
ICGC DataPortalENSG00000144834
TCGA cBioPortalTAGLN3
AceView (NCBI)TAGLN3
Genatlas (Paris)TAGLN3
SOURCE (Princeton)TAGLN3
Genetics Home Reference (NIH)TAGLN3
Genomic and cartography
GoldenPath hg38 (UCSC)TAGLN3  -     chr3:111998739-112013888 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAGLN3  -     3q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTAGLN3 - 3q13.2 [CytoView hg19]  TAGLN3 - 3q13.2 [CytoView hg38]
ImmunoBaseENSG00000144834
Genome Data Viewer NCBITAGLN3 [Mapview hg19]  
OMIM607953   
Gene and transcription
Genbank (Entrez)AF087855 AF112201 AF303058 AK315289 BC015329
RefSeq transcript (Entrez)NM_001008272 NM_001008273 NM_013259
Consensus coding sequences : CCDS (NCBI)TAGLN3
Gene ExpressionTAGLN3 [ NCBI-GEO ]   TAGLN3 [ EBI - ARRAY_EXPRESS ]   TAGLN3 [ SEEK ]   TAGLN3 [ MEM ]
Gene Expression Viewer (FireBrowse)TAGLN3 [ Firebrowse - Broad ]
GenevisibleExpression of TAGLN3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29114
GTEX Portal (Tissue expression)TAGLN3
Human Protein AtlasENSG00000144834-TAGLN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI15
PhosPhoSitePlusQ9UI15
Domaine pattern : Prosite (Expaxy)CALPONIN_1 (PS01052)    CALPONIN_2 (PS51122)    CH (PS50021)   
Domains : Interpro (EBI)Calponin_repeat    CH-domain    CH_dom_sf    SM22_calponin    TAGLN3   
Domain families : Pfam (Sanger)Calponin (PF00402)    CH (PF00307)   
Domain families : Pfam (NCBI)pfam00402    pfam00307   
Domain families : Smart (EMBL)CH (SM00033)  
Conserved Domain (NCBI)TAGLN3
SuperfamilyQ9UI15
AlphaFold pdb e-kbQ9UI15   
Human Protein Atlas [tissue]ENSG00000144834-TAGLN3 [tissue]
HPRD12136
Protein Interaction databases
DIP (DOE-UCLA)Q9UI15
IntAct (EBI)Q9UI15
BioGRIDTAGLN3
STRING (EMBL)TAGLN3
ZODIACTAGLN3
Ontologies - Pathways
QuickGOQ9UI15
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  nucleus  central nervous system development  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  nucleus  central nervous system development  
NDEx NetworkTAGLN3
Atlas of Cancer Signalling NetworkTAGLN3
Wikipedia pathwaysTAGLN3
Orthology - Evolution
OrthoDB29114
GeneTree (enSembl)ENSG00000144834
Phylogenetic Trees/Animal Genes : TreeFamTAGLN3
Homologs : HomoloGeneTAGLN3
Homology/Alignments : Family Browser (UCSC)TAGLN3
Gene fusions - Rearrangements
Fusion : QuiverTAGLN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAGLN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAGLN3
dbVarTAGLN3
ClinVarTAGLN3
MonarchTAGLN3
1000_GenomesTAGLN3 
Exome Variant ServerTAGLN3
GNOMAD BrowserENSG00000144834
Varsome BrowserTAGLN3
ACMGTAGLN3 variants
VarityQ9UI15
Genomic Variants (DGV)TAGLN3 [DGVbeta]
DECIPHERTAGLN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAGLN3 
Mutations
ICGC Data PortalTAGLN3 
TCGA Data PortalTAGLN3 
Broad Tumor PortalTAGLN3
OASIS PortalTAGLN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAGLN3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAGLN3
Mutations and Diseases : HGMDTAGLN3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAGLN3
DgiDB (Drug Gene Interaction Database)TAGLN3
DoCM (Curated mutations)TAGLN3
CIViC (Clinical Interpretations of Variants in Cancer)TAGLN3
Cancer3DTAGLN3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607953   
Orphanet
DisGeNETTAGLN3
MedgenTAGLN3
Genetic Testing Registry TAGLN3
NextProtQ9UI15 [Medical]
GENETestsTAGLN3
Target ValidationTAGLN3
Huge Navigator TAGLN3 [HugePedia]
ClinGenTAGLN3
Clinical trials, drugs, therapy
MyCancerGenomeTAGLN3
Protein Interactions : CTDTAGLN3
Pharm GKB GenePA134896732
PharosQ9UI15
Clinical trialTAGLN3
Miscellaneous
canSAR (ICR)TAGLN3
HarmonizomeTAGLN3
DataMed IndexTAGLN3
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAGLN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:24:49 CEST 2021

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