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TANC1 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1)

Identity

Alias (NCBI)ROLSB
TANC
HGNC (Hugo) TANC1
HGNC Alias symbKIAA1728
ROLSB
HGNC Alias namerolling pebbles homolog B (Drosophila)
LocusID (NCBI) 85461
Atlas_Id 54684
Location 2q24.2  [Link to chromosome band 2q24]
Location_base_pair Starts at 158968640 and ends at 159232659 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PVR (19q13.31) / TANC1 (2q24.2)SH3RF2 (5q32) / TANC1 (2q24.2)SLC38A11 (2q24.3) / TANC1 (2q24.2)
TANC1 (2q24.2) / BTF3L4 (1p32.3)TANC1 (2q24.2) / CRLF1 (19p13.11)TANC1 (2q24.2) / MAML2 (11q21)
TANC1 (2q24.2) / MTMR4 (17q22)TANC1 (2q24.2) / NR4A2 (2q24.1)TANC1 (2q24.2) / PKP4 (2q24.1)
TANC1 (2q24.2) / SLC4A1AP (2p23.3)TANC1 (2q24.2) / TMEM2 (9q21.13)TANC1 (2q24.2) / VSIG10 (12q24.23)
TANC1 2q24.2 / NR4A2 2q24.1TANC1 2q24.2 / PKP4 2q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TANC1   29364
Cards
Entrez_Gene (NCBI)TANC1    tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
AliasesROLSB; TANC
GeneCards (Weizmann)TANC1
Ensembl hg19 (Hinxton)ENSG00000115183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115183 [Gene_View]  ENSG00000115183 [Sequence]  chr2:158968640-159232659 [Contig_View]  TANC1 [Vega]
ICGC DataPortalENSG00000115183
TCGA cBioPortalTANC1
AceView (NCBI)TANC1
Genatlas (Paris)TANC1
SOURCE (Princeton)TANC1
Genetics Home Reference (NIH)TANC1
Genomic and cartography
GoldenPath hg38 (UCSC)TANC1  -     chr2:158968640-159232659 +  2q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TANC1  -     2q24.2   [Description]    (hg19-Feb_2009)
GoldenPathTANC1 - 2q24.2 [CytoView hg19]  TANC1 - 2q24.2 [CytoView hg38]
ImmunoBaseENSG00000115183
Genome Data Viewer NCBITANC1 [Mapview hg19]  
OMIM611397   
Gene and transcription
Genbank (Entrez)AA773835 AB051515 AK000401 AK023422 AK094285
RefSeq transcript (Entrez)NM_001145909 NM_001350062 NM_001350063 NM_001350064 NM_001350065 NM_033394
Consensus coding sequences : CCDS (NCBI)TANC1
Gene ExpressionTANC1 [ NCBI-GEO ]   TANC1 [ EBI - ARRAY_EXPRESS ]   TANC1 [ SEEK ]   TANC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TANC1 [ Firebrowse - Broad ]
GenevisibleExpression of TANC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85461
GTEX Portal (Tissue expression)TANC1
Human Protein AtlasENSG00000115183-TANC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0D5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0D5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0D5
PhosPhoSitePlusQ9C0D5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  TPR (SM00028)  
Conserved Domain (NCBI)TANC1
SuperfamilyQ9C0D5
AlphaFold pdb e-kbQ9C0D5   
Human Protein Atlas [tissue]ENSG00000115183-TANC1 [tissue]
HPRD18146
Protein Interaction databases
DIP (DOE-UCLA)Q9C0D5
IntAct (EBI)Q9C0D5
BioGRIDTANC1
STRING (EMBL)TANC1
ZODIACTANC1
Ontologies - Pathways
QuickGOQ9C0D5
Ontology : AmiGOprotein binding  myoblast fusion  visual learning  postsynaptic density  dendrite  neuronal cell body  axon terminus  dendritic spine maintenance  
Ontology : EGO-EBIprotein binding  myoblast fusion  visual learning  postsynaptic density  dendrite  neuronal cell body  axon terminus  dendritic spine maintenance  
NDEx NetworkTANC1
Atlas of Cancer Signalling NetworkTANC1
Wikipedia pathwaysTANC1
Orthology - Evolution
OrthoDB85461
GeneTree (enSembl)ENSG00000115183
Phylogenetic Trees/Animal Genes : TreeFamTANC1
Homologs : HomoloGeneTANC1
Homology/Alignments : Family Browser (UCSC)TANC1
Gene fusions - Rearrangements
Fusion : MitelmanTANC1/MTMR4 [2q24.2/17q22]  
Fusion : MitelmanTANC1/NR4A2 [2q24.2/2q24.1]  
Fusion : MitelmanTANC1/PKP4 [2q24.2/2q24.1]  
Fusion : MitelmanTANC1/SLC4A1AP [2q24.2/2p23.3]  
Fusion : QuiverTANC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTANC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TANC1
dbVarTANC1
ClinVarTANC1
MonarchTANC1
1000_GenomesTANC1 
Exome Variant ServerTANC1
GNOMAD BrowserENSG00000115183
Varsome BrowserTANC1
ACMGTANC1 variants
VarityQ9C0D5
Genomic Variants (DGV)TANC1 [DGVbeta]
DECIPHERTANC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTANC1 
Mutations
ICGC Data PortalTANC1 
TCGA Data PortalTANC1 
Broad Tumor PortalTANC1
OASIS PortalTANC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTANC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTANC1
Mutations and Diseases : HGMDTANC1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTANC1
DgiDB (Drug Gene Interaction Database)TANC1
DoCM (Curated mutations)TANC1
CIViC (Clinical Interpretations of Variants in Cancer)TANC1
Cancer3DTANC1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611397   
Orphanet
DisGeNETTANC1
MedgenTANC1
Genetic Testing Registry TANC1
NextProtQ9C0D5 [Medical]
GENETestsTANC1
Target ValidationTANC1
Huge Navigator TANC1 [HugePedia]
ClinGenTANC1
Clinical trials, drugs, therapy
MyCancerGenomeTANC1
Protein Interactions : CTDTANC1
Pharm GKB GenePA142670838
PharosQ9C0D5
Clinical trialTANC1
Miscellaneous
canSAR (ICR)TANC1
HarmonizomeTANC1
DataMed IndexTANC1
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTANC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:13 CEST 2021

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