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TANGO6 (transport and golgi organization 6 homolog)

Identity

Alias (NCBI)TMCO7
HGNC (Hugo) TANGO6
HGNC Alias symbFLJ12688
KIAA1746
HGNC Previous nameTMCO7
HGNC Previous nametransmembrane and coiled-coil domains 7
 transport and golgi organization 6 homolog (Drosophila)
LocusID (NCBI) 79613
Atlas_Id 74478
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 68843531 and ends at 69085182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LHPP (10q26.13) / TANGO6 (16q22.1)SNTB2 (16q22.1) / TANGO6 (16q22.1)TANGO6 (16q22.1) / CDH1 (16q22.1)
TANGO6 (16q22.1) / DUS2 (16q22.1)TANGO6 (16q22.1) / UTP4 (16q22.1)WWP2 (16q22.1) / TANGO6 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TANGO6   25749
Cards
Entrez_Gene (NCBI)TANGO6    transport and golgi organization 6 homolog
AliasesTMCO7
GeneCards (Weizmann)TANGO6
Ensembl hg19 (Hinxton)ENSG00000103047 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103047 [Gene_View]  ENSG00000103047 [Sequence]  chr16:68843531-69085182 [Contig_View]  TANGO6 [Vega]
ICGC DataPortalENSG00000103047
TCGA cBioPortalTANGO6
AceView (NCBI)TANGO6
Genatlas (Paris)TANGO6
SOURCE (Princeton)TANGO6
Genetics Home Reference (NIH)TANGO6
Genomic and cartography
GoldenPath hg38 (UCSC)TANGO6  -     chr16:68843531-69085182 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TANGO6  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTANGO6 - 16q22.1 [CytoView hg19]  TANGO6 - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000103047
Genome Data Viewer NCBITANGO6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB051533 AK022750 AK095333 BC001813 BC001839
RefSeq transcript (Entrez)NM_024562
Consensus coding sequences : CCDS (NCBI)TANGO6
Gene ExpressionTANGO6 [ NCBI-GEO ]   TANGO6 [ EBI - ARRAY_EXPRESS ]   TANGO6 [ SEEK ]   TANGO6 [ MEM ]
Gene Expression Viewer (FireBrowse)TANGO6 [ Firebrowse - Broad ]
GenevisibleExpression of TANGO6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79613
GTEX Portal (Tissue expression)TANGO6
Human Protein AtlasENSG00000103047-TANGO6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0B7
PhosPhoSitePlusQ9C0B7
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Rtp1_C1    Rtp1_C2    TANGO6/Rtp1   
Domain families : Pfam (Sanger)RTP1_C1 (PF10363)    RTP1_C2 (PF10304)   
Domain families : Pfam (NCBI)pfam10363    pfam10304   
Conserved Domain (NCBI)TANGO6
SuperfamilyQ9C0B7
AlphaFold pdb e-kbQ9C0B7   
Human Protein Atlas [tissue]ENSG00000103047-TANGO6 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9C0B7
IntAct (EBI)Q9C0B7
BioGRIDTANGO6
STRING (EMBL)TANGO6
ZODIACTANGO6
Ontologies - Pathways
QuickGOQ9C0B7
Ontology : AmiGOprotein secretion  integral component of membrane  
Ontology : EGO-EBIprotein secretion  integral component of membrane  
NDEx NetworkTANGO6
Atlas of Cancer Signalling NetworkTANGO6
Wikipedia pathwaysTANGO6
Orthology - Evolution
OrthoDB79613
GeneTree (enSembl)ENSG00000103047
Phylogenetic Trees/Animal Genes : TreeFamTANGO6
Homologs : HomoloGeneTANGO6
Homology/Alignments : Family Browser (UCSC)TANGO6
Gene fusions - Rearrangements
Fusion : QuiverTANGO6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTANGO6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TANGO6
dbVarTANGO6
ClinVarTANGO6
MonarchTANGO6
1000_GenomesTANGO6 
Exome Variant ServerTANGO6
GNOMAD BrowserENSG00000103047
Varsome BrowserTANGO6
ACMGTANGO6 variants
VarityQ9C0B7
Genomic Variants (DGV)TANGO6 [DGVbeta]
DECIPHERTANGO6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTANGO6 
Mutations
ICGC Data PortalTANGO6 
TCGA Data PortalTANGO6 
Broad Tumor PortalTANGO6
OASIS PortalTANGO6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTANGO6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTANGO6
Mutations and Diseases : HGMDTANGO6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTANGO6
DgiDB (Drug Gene Interaction Database)TANGO6
DoCM (Curated mutations)TANGO6
CIViC (Clinical Interpretations of Variants in Cancer)TANGO6
Cancer3DTANGO6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTANGO6
MedgenTANGO6
Genetic Testing Registry TANGO6
NextProtQ9C0B7 [Medical]
GENETestsTANGO6
Target ValidationTANGO6
Huge Navigator TANGO6 [HugePedia]
ClinGenTANGO6
Clinical trials, drugs, therapy
MyCancerGenomeTANGO6
Protein Interactions : CTDTANGO6
Pharm GKB GenePA162405811
PharosQ9C0B7
Clinical trialTANGO6
Miscellaneous
canSAR (ICR)TANGO6
HarmonizomeTANGO6
DataMed IndexTANGO6
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTANGO6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:50 CEST 2021

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