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TANGO6 (transport and golgi organization 6 homolog)

Identity

Alias_namesTMCO7
transmembrane and coiled-coil domains 7
transport and golgi organization 6 homolog (Drosophila)
Alias_symbol (synonym)FLJ12688
KIAA1746
Other alias
HGNC (Hugo) TANGO6
LocusID (NCBI) 79613
Atlas_Id 74478
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 68843606 and ends at 69085182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LHPP (10q26.13) / TANGO6 (16q22.1)SNTB2 (16q22.1) / TANGO6 (16q22.1)TANGO6 (16q22.1) / CDH1 (16q22.1)
TANGO6 (16q22.1) / DUS2 (16q22.1)TANGO6 (16q22.1) / UTP4 (16q22.1)WWP2 (16q22.1) / TANGO6 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TANGO6   25749
Cards
Entrez_Gene (NCBI)TANGO6  79613  transport and golgi organization 6 homolog
AliasesTMCO7
GeneCards (Weizmann)TANGO6
Ensembl hg19 (Hinxton)ENSG00000103047 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103047 [Gene_View]  chr16:68843606-69085182 [Contig_View]  TANGO6 [Vega]
ICGC DataPortalENSG00000103047
TCGA cBioPortalTANGO6
AceView (NCBI)TANGO6
Genatlas (Paris)TANGO6
WikiGenes79613
SOURCE (Princeton)TANGO6
Genetics Home Reference (NIH)TANGO6
Genomic and cartography
GoldenPath hg38 (UCSC)TANGO6  -     chr16:68843606-69085182 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TANGO6  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblTANGO6 - 16q22.1 [CytoView hg19]  TANGO6 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBITANGO6 [Mapview hg19]  TANGO6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051533 AK022750 AK095333 BC001813 BC001839
RefSeq transcript (Entrez)NM_024562
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TANGO6
Cluster EST : UnigeneHs.13526 [ NCBI ]
CGAP (NCI)Hs.13526
Alternative Splicing GalleryENSG00000103047
Gene ExpressionTANGO6 [ NCBI-GEO ]   TANGO6 [ EBI - ARRAY_EXPRESS ]   TANGO6 [ SEEK ]   TANGO6 [ MEM ]
Gene Expression Viewer (FireBrowse)TANGO6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79613
GTEX Portal (Tissue expression)TANGO6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0B7
Splice isoforms : SwissVarQ9C0B7
PhosPhoSitePlusQ9C0B7
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Rtp1_C1    Rtp1_C2   
Domain families : Pfam (Sanger)RTP1_C1 (PF10363)    RTP1_C2 (PF10304)   
Domain families : Pfam (NCBI)pfam10363    pfam10304   
Conserved Domain (NCBI)TANGO6
DMDM Disease mutations79613
Blocks (Seattle)TANGO6
SuperfamilyQ9C0B7
Human Protein AtlasENSG00000103047
Peptide AtlasQ9C0B7
IPIIPI00034201   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0B7
IntAct (EBI)Q9C0B7
FunCoupENSG00000103047
BioGRIDTANGO6
STRING (EMBL)TANGO6
ZODIACTANGO6
Ontologies - Pathways
QuickGOQ9C0B7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTANGO6
Atlas of Cancer Signalling NetworkTANGO6
Wikipedia pathwaysTANGO6
Orthology - Evolution
OrthoDB79613
GeneTree (enSembl)ENSG00000103047
Phylogenetic Trees/Animal Genes : TreeFamTANGO6
HOVERGENQ9C0B7
HOGENOMQ9C0B7
Homologs : HomoloGeneTANGO6
Homology/Alignments : Family Browser (UCSC)TANGO6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTANGO6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TANGO6
dbVarTANGO6
ClinVarTANGO6
1000_GenomesTANGO6 
Exome Variant ServerTANGO6
ExAC (Exome Aggregation Consortium)TANGO6 (select the gene name)
Genetic variants : HAPMAP79613
Genomic Variants (DGV)TANGO6 [DGVbeta]
DECIPHERTANGO6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTANGO6 
Mutations
ICGC Data PortalTANGO6 
TCGA Data PortalTANGO6 
Broad Tumor PortalTANGO6
OASIS PortalTANGO6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTANGO6
BioMutasearch TANGO6
DgiDB (Drug Gene Interaction Database)TANGO6
DoCM (Curated mutations)TANGO6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TANGO6 (select a term)
intoGenTANGO6
Cancer3DTANGO6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTANGO6
Genetic Testing Registry TANGO6
NextProtQ9C0B7 [Medical]
TSGene79613
GENETestsTANGO6
Target ValidationTANGO6
Huge Navigator TANGO6 [HugePedia]
snp3D : Map Gene to Disease79613
BioCentury BCIQTANGO6
ClinGenTANGO6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79613
Chemical/Pharm GKB GenePA162405811
Clinical trialTANGO6
Miscellaneous
canSAR (ICR)TANGO6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTANGO6
EVEXTANGO6
GoPubMedTANGO6
iHOPTANGO6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:57 CEST 2017

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