Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAPBPL (TAP binding protein like)

Identity

Alias_namesTAP binding protein-like
Alias_symbol (synonym)TAPBP-R
FLJ10143
TAPBPR
Other alias
HGNC (Hugo) TAPBPL
LocusID (NCBI) 55080
Atlas_Id 52284
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6452011 and ends at 6462322 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAPBPL (12p13.31) / ACTN4 (19q13.2)TAPBPL (12p13.31) / ARHGAP21 (10p12.1)TAPBPL (12p13.31) / POM121 (7q11.23)
TAPBPL (12p13.31) / TAPBPL (12p13.31)WDR74 (11q12.3) / TAPBPL (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAPBPL   30683
Cards
Entrez_Gene (NCBI)TAPBPL  55080  TAP binding protein like
AliasesTAPBP-R; TAPBPR
GeneCards (Weizmann)TAPBPL
Ensembl hg19 (Hinxton)ENSG00000139192 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139192 [Gene_View]  chr12:6452011-6462322 [Contig_View]  TAPBPL [Vega]
ICGC DataPortalENSG00000139192
TCGA cBioPortalTAPBPL
AceView (NCBI)TAPBPL
Genatlas (Paris)TAPBPL
WikiGenes55080
SOURCE (Princeton)TAPBPL
Genetics Home Reference (NIH)TAPBPL
Genomic and cartography
GoldenPath hg38 (UCSC)TAPBPL  -     chr12:6452011-6462322 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAPBPL  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblTAPBPL - 12p13.31 [CytoView hg19]  TAPBPL - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBITAPBPL [Mapview hg19]  TAPBPL [Mapview hg38]
OMIM607081   
Gene and transcription
Genbank (Entrez)AI184901 AI273155 AK001005 AK002056 AK098035
RefSeq transcript (Entrez)NM_018009
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAPBPL
Cluster EST : UnigeneHs.504597 [ NCBI ]
CGAP (NCI)Hs.504597
Alternative Splicing GalleryENSG00000139192
Gene ExpressionTAPBPL [ NCBI-GEO ]   TAPBPL [ EBI - ARRAY_EXPRESS ]   TAPBPL [ SEEK ]   TAPBPL [ MEM ]
Gene Expression Viewer (FireBrowse)TAPBPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55080
GTEX Portal (Tissue expression)TAPBPL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX59
Splice isoforms : SwissVarQ9BX59
PhosPhoSitePlusQ9BX59
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)C1-set (PF07654)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07654    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  
Conserved Domain (NCBI)TAPBPL
DMDM Disease mutations55080
Blocks (Seattle)TAPBPL
SuperfamilyQ9BX59
Human Protein AtlasENSG00000139192
Peptide AtlasQ9BX59
HPRD06153
IPIIPI00306774   IPI00792757   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX59
IntAct (EBI)Q9BX59
FunCoupENSG00000139192
BioGRIDTAPBPL
STRING (EMBL)TAPBPL
ZODIACTAPBPL
Ontologies - Pathways
QuickGOQ9BX59
Ontology : AmiGOGolgi membrane  immune system process  negative regulation of antigen processing and presentation of peptide antigen via MHC class I  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  protein complex binding  
Ontology : EGO-EBIGolgi membrane  immune system process  negative regulation of antigen processing and presentation of peptide antigen via MHC class I  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  protein complex binding  
NDEx NetworkTAPBPL
Atlas of Cancer Signalling NetworkTAPBPL
Wikipedia pathwaysTAPBPL
Orthology - Evolution
OrthoDB55080
GeneTree (enSembl)ENSG00000139192
Phylogenetic Trees/Animal Genes : TreeFamTAPBPL
HOVERGENQ9BX59
HOGENOMQ9BX59
Homologs : HomoloGeneTAPBPL
Homology/Alignments : Family Browser (UCSC)TAPBPL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAPBPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAPBPL
dbVarTAPBPL
ClinVarTAPBPL
1000_GenomesTAPBPL 
Exome Variant ServerTAPBPL
ExAC (Exome Aggregation Consortium)TAPBPL (select the gene name)
Genetic variants : HAPMAP55080
Genomic Variants (DGV)TAPBPL [DGVbeta]
DECIPHERTAPBPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAPBPL 
Mutations
ICGC Data PortalTAPBPL 
TCGA Data PortalTAPBPL 
Broad Tumor PortalTAPBPL
OASIS PortalTAPBPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAPBPL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAPBPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAPBPL
DgiDB (Drug Gene Interaction Database)TAPBPL
DoCM (Curated mutations)TAPBPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAPBPL (select a term)
intoGenTAPBPL
Cancer3DTAPBPL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607081   
Orphanet
MedgenTAPBPL
Genetic Testing Registry TAPBPL
NextProtQ9BX59 [Medical]
TSGene55080
GENETestsTAPBPL
Huge Navigator TAPBPL [HugePedia]
snp3D : Map Gene to Disease55080
BioCentury BCIQTAPBPL
ClinGenTAPBPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55080
Chemical/Pharm GKB GenePA134955671
Clinical trialTAPBPL
Miscellaneous
canSAR (ICR)TAPBPL (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAPBPL
EVEXTAPBPL
GoPubMedTAPBPL
iHOPTAPBPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:40:12 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.