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TAPBPL (TAP binding protein like)

Identity

Alias (NCBI)TAPBP-R
TAPBPR
HGNC (Hugo) TAPBPL
HGNC Alias symbTAPBP-R
FLJ10143
TAPBPR
HGNC Previous nameTAP binding protein-like
LocusID (NCBI) 55080
Atlas_Id 52284
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6452042 and ends at 6462316 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAPBPL (12p13.31) / ACTN4 (19q13.2)TAPBPL (12p13.31) / ARHGAP21 (10p12.1)TAPBPL (12p13.31) / POM121 (7q11.23)
TAPBPL (12p13.31) / TAPBPL (12p13.31)WDR74 (11q12.3) / TAPBPL (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAPBPL   30683
Cards
Entrez_Gene (NCBI)TAPBPL    TAP binding protein like
AliasesTAPBP-R; TAPBPR
GeneCards (Weizmann)TAPBPL
Ensembl hg19 (Hinxton)ENSG00000139192 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139192 [Gene_View]  ENSG00000139192 [Sequence]  chr12:6452042-6462316 [Contig_View]  TAPBPL [Vega]
ICGC DataPortalENSG00000139192
TCGA cBioPortalTAPBPL
AceView (NCBI)TAPBPL
Genatlas (Paris)TAPBPL
SOURCE (Princeton)TAPBPL
Genetics Home Reference (NIH)TAPBPL
Genomic and cartography
GoldenPath hg38 (UCSC)TAPBPL  -     chr12:6452042-6462316 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAPBPL  -     12p13.31   [Description]    (hg19-Feb_2009)
GoldenPathTAPBPL - 12p13.31 [CytoView hg19]  TAPBPL - 12p13.31 [CytoView hg38]
ImmunoBaseENSG00000139192
Genome Data Viewer NCBITAPBPL [Mapview hg19]  
OMIM607081   
Gene and transcription
Genbank (Entrez)AI184901 AI273155 AK001005 AK002056 AK098035
RefSeq transcript (Entrez)NM_001351355 NM_018009
Consensus coding sequences : CCDS (NCBI)TAPBPL
Gene ExpressionTAPBPL [ NCBI-GEO ]   TAPBPL [ EBI - ARRAY_EXPRESS ]   TAPBPL [ SEEK ]   TAPBPL [ MEM ]
Gene Expression Viewer (FireBrowse)TAPBPL [ Firebrowse - Broad ]
GenevisibleExpression of TAPBPL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55080
GTEX Portal (Tissue expression)TAPBPL
Human Protein AtlasENSG00000139192-TAPBPL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX59
PhosPhoSitePlusQ9BX59
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)C1-set (PF07654)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07654    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  
Conserved Domain (NCBI)TAPBPL
PDB (RSDB)5WER   
PDB Europe5WER   
PDB (PDBSum)5WER   
PDB (IMB)5WER   
Structural Biology KnowledgeBase5WER   
SCOP (Structural Classification of Proteins)5WER   
CATH (Classification of proteins structures)5WER   
SuperfamilyQ9BX59
AlphaFold pdb e-kbQ9BX59   
Human Protein Atlas [tissue]ENSG00000139192-TAPBPL [tissue]
HPRD06153
Protein Interaction databases
DIP (DOE-UCLA)Q9BX59
IntAct (EBI)Q9BX59
BioGRIDTAPBPL
STRING (EMBL)TAPBPL
ZODIACTAPBPL
Ontologies - Pathways
QuickGOQ9BX59
Ontology : AmiGOGolgi membrane  peptide antigen assembly with MHC class I protein complex  negative regulation of antigen processing and presentation of peptide antigen via MHC class I  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  MHC class I protein complex binding  
Ontology : EGO-EBIGolgi membrane  peptide antigen assembly with MHC class I protein complex  negative regulation of antigen processing and presentation of peptide antigen via MHC class I  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  integral component of membrane  MHC class I protein complex binding  
NDEx NetworkTAPBPL
Atlas of Cancer Signalling NetworkTAPBPL
Wikipedia pathwaysTAPBPL
Orthology - Evolution
OrthoDB55080
GeneTree (enSembl)ENSG00000139192
Phylogenetic Trees/Animal Genes : TreeFamTAPBPL
Homologs : HomoloGeneTAPBPL
Homology/Alignments : Family Browser (UCSC)TAPBPL
Gene fusions - Rearrangements
Fusion : QuiverTAPBPL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAPBPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAPBPL
dbVarTAPBPL
ClinVarTAPBPL
MonarchTAPBPL
1000_GenomesTAPBPL 
Exome Variant ServerTAPBPL
GNOMAD BrowserENSG00000139192
Varsome BrowserTAPBPL
ACMGTAPBPL variants
VarityQ9BX59
Genomic Variants (DGV)TAPBPL [DGVbeta]
DECIPHERTAPBPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAPBPL 
Mutations
ICGC Data PortalTAPBPL 
TCGA Data PortalTAPBPL 
Broad Tumor PortalTAPBPL
OASIS PortalTAPBPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAPBPL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAPBPL
Mutations and Diseases : HGMDTAPBPL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAPBPL
DgiDB (Drug Gene Interaction Database)TAPBPL
DoCM (Curated mutations)TAPBPL
CIViC (Clinical Interpretations of Variants in Cancer)TAPBPL
Cancer3DTAPBPL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607081   
Orphanet
DisGeNETTAPBPL
MedgenTAPBPL
Genetic Testing Registry TAPBPL
NextProtQ9BX59 [Medical]
GENETestsTAPBPL
Target ValidationTAPBPL
Huge Navigator TAPBPL [HugePedia]
ClinGenTAPBPL
Clinical trials, drugs, therapy
MyCancerGenomeTAPBPL
Protein Interactions : CTDTAPBPL
Pharm GKB GenePA134955671
PharosQ9BX59
Clinical trialTAPBPL
Miscellaneous
canSAR (ICR)TAPBPL
HarmonizomeTAPBPL
DataMed IndexTAPBPL
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAPBPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:15 CEST 2021

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