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TAPT1 (transmembrane anterior posterior transformation 1)

Identity

Alias_symbol (synonym)FLJ90013
Other aliasCMVFR
OCLSBG
HGNC (Hugo) TAPT1
LocusID (NCBI) 202018
Atlas_Id 54685
Location 4p15.32  [Link to chromosome band 4p15]
Location_base_pair Starts at 16160505 and ends at 16226538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NBPF1 (1p36.13) / TAPT1 (4p15.32)PROM1 (4p15.32) / TAPT1 (4p15.32)TAPT1 (4p15.32) / LDB2 (4p15.32)
TAPT1 (4p15.32) / LYST (1q42.3)TAPT1 4p15.32 / LDB2 4p15.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAPT1   26887
Cards
Entrez_Gene (NCBI)TAPT1  202018  transmembrane anterior posterior transformation 1
AliasesCMVFR; OCLSBG
GeneCards (Weizmann)TAPT1
Ensembl hg19 (Hinxton)ENSG00000169762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169762 [Gene_View]  chr4:16160505-16226538 [Contig_View]  TAPT1 [Vega]
ICGC DataPortalENSG00000169762
TCGA cBioPortalTAPT1
AceView (NCBI)TAPT1
Genatlas (Paris)TAPT1
WikiGenes202018
SOURCE (Princeton)TAPT1
Genetics Home Reference (NIH)TAPT1
Genomic and cartography
GoldenPath hg38 (UCSC)TAPT1  -     chr4:16160505-16226538 -  4p15.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAPT1  -     4p15.32   [Description]    (hg19-Feb_2009)
EnsemblTAPT1 - 4p15.32 [CytoView hg19]  TAPT1 - 4p15.32 [CytoView hg38]
Mapping of homologs : NCBITAPT1 [Mapview hg19]  TAPT1 [Mapview hg38]
OMIM612758   616897   
Gene and transcription
Genbank (Entrez)AA811306 AF189251 AK074494 AK296104 AK299163
RefSeq transcript (Entrez)NM_153365
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAPT1
Cluster EST : UnigeneHs.479223 [ NCBI ]
CGAP (NCI)Hs.479223
Alternative Splicing GalleryENSG00000169762
Gene ExpressionTAPT1 [ NCBI-GEO ]   TAPT1 [ EBI - ARRAY_EXPRESS ]   TAPT1 [ SEEK ]   TAPT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAPT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202018
GTEX Portal (Tissue expression)TAPT1
Human Protein AtlasENSG00000169762-TAPT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXT6
Splice isoforms : SwissVarQ6NXT6
PhosPhoSitePlusQ6NXT6
Domains : Interpro (EBI)Tatp1   
Domain families : Pfam (Sanger)DUF747 (PF05346)   
Domain families : Pfam (NCBI)pfam05346   
Conserved Domain (NCBI)TAPT1
DMDM Disease mutations202018
Blocks (Seattle)TAPT1
SuperfamilyQ6NXT6
Human Protein Atlas [tissue]ENSG00000169762-TAPT1 [tissue]
Peptide AtlasQ6NXT6
IPIIPI00166468   IPI00909355   IPI01013147   IPI01011664   IPI00968149   IPI00965134   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXT6
IntAct (EBI)Q6NXT6
FunCoupENSG00000169762
BioGRIDTAPT1
STRING (EMBL)TAPT1
ZODIACTAPT1
Ontologies - Pathways
QuickGOQ6NXT6
Ontology : AmiGOossification  in utero embryonic development  cytoplasm  centrosome  G-protein coupled receptor signaling pathway  post-embryonic development  neural crest cell development  integral component of membrane  growth hormone-releasing hormone receptor activity  cell projection organization  ciliary basal body  positive regulation of cilium assembly  embryonic skeletal system development  cartilage development  positive regulation of cartilage development  positive regulation of bone development  
Ontology : EGO-EBIossification  in utero embryonic development  cytoplasm  centrosome  G-protein coupled receptor signaling pathway  post-embryonic development  neural crest cell development  integral component of membrane  growth hormone-releasing hormone receptor activity  cell projection organization  ciliary basal body  positive regulation of cilium assembly  embryonic skeletal system development  cartilage development  positive regulation of cartilage development  positive regulation of bone development  
NDEx NetworkTAPT1
Atlas of Cancer Signalling NetworkTAPT1
Wikipedia pathwaysTAPT1
Orthology - Evolution
OrthoDB202018
GeneTree (enSembl)ENSG00000169762
Phylogenetic Trees/Animal Genes : TreeFamTAPT1
HOVERGENQ6NXT6
HOGENOMQ6NXT6
Homologs : HomoloGeneTAPT1
Homology/Alignments : Family Browser (UCSC)TAPT1
Gene fusions - Rearrangements
Fusion : MitelmanPROM1/TAPT1 [4p15.32/4p15.32]  [t(4;4)(p15;p15)]  
Fusion : MitelmanTAPT1/LDB2 [4p15.32/4p15.32]  [t(4;4)(p15;p15)]  
Fusion: TCGA_MDACCTAPT1 4p15.32 LDB2 4p15.32 BLCA
Tumor Fusion PortalTAPT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAPT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAPT1
dbVarTAPT1
ClinVarTAPT1
1000_GenomesTAPT1 
Exome Variant ServerTAPT1
ExAC (Exome Aggregation Consortium)ENSG00000169762
GNOMAD BrowserENSG00000169762
Genetic variants : HAPMAP202018
Genomic Variants (DGV)TAPT1 [DGVbeta]
DECIPHERTAPT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAPT1 
Mutations
ICGC Data PortalTAPT1 
TCGA Data PortalTAPT1 
Broad Tumor PortalTAPT1
OASIS PortalTAPT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAPT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAPT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAPT1
DgiDB (Drug Gene Interaction Database)TAPT1
DoCM (Curated mutations)TAPT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAPT1 (select a term)
intoGenTAPT1
Cancer3DTAPT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612758    616897   
Orphanet23725   
DisGeNETTAPT1
MedgenTAPT1
Genetic Testing Registry TAPT1
NextProtQ6NXT6 [Medical]
TSGene202018
GENETestsTAPT1
Target ValidationTAPT1
Huge Navigator TAPT1 [HugePedia]
snp3D : Map Gene to Disease202018
BioCentury BCIQTAPT1
ClinGenTAPT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202018
Chemical/Pharm GKB GenePA162405167
Clinical trialTAPT1
Miscellaneous
canSAR (ICR)TAPT1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAPT1
EVEXTAPT1
GoPubMedTAPT1
iHOPTAPT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:37:38 CET 2017

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