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TAPT1 (transmembrane anterior posterior transformation 1)

Identity

Alias (NCBI)CMVFR
OCLSBG
HGNC (Hugo) TAPT1
HGNC Alias symbFLJ90013
LocusID (NCBI) 202018
Atlas_Id 54685
Location 4p15.32  [Link to chromosome band 4p15]
Location_base_pair Starts at 16160505 and ends at 16226471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NBPF1 (1p36.13) / TAPT1 (4p15.32)PROM1 (4p15.32) / TAPT1 (4p15.32)TAPT1 (4p15.32) / LDB2 (4p15.32)
TAPT1 (4p15.32) / LYST (1q42.3)TAPT1 4p15.32 / LDB2 4p15.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TAPT1   26887
Cards
Entrez_Gene (NCBI)TAPT1    transmembrane anterior posterior transformation 1
AliasesCMVFR; OCLSBG
GeneCards (Weizmann)TAPT1
Ensembl hg19 (Hinxton)ENSG00000169762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169762 [Gene_View]  ENSG00000169762 [Sequence]  chr4:16160505-16226471 [Contig_View]  TAPT1 [Vega]
ICGC DataPortalENSG00000169762
TCGA cBioPortalTAPT1
AceView (NCBI)TAPT1
Genatlas (Paris)TAPT1
SOURCE (Princeton)TAPT1
Genetics Home Reference (NIH)TAPT1
Genomic and cartography
GoldenPath hg38 (UCSC)TAPT1  -     chr4:16160505-16226471 -  4p15.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAPT1  -     4p15.32   [Description]    (hg19-Feb_2009)
GoldenPathTAPT1 - 4p15.32 [CytoView hg19]  TAPT1 - 4p15.32 [CytoView hg38]
ImmunoBaseENSG00000169762
Genome Data Viewer NCBITAPT1 [Mapview hg19]  
OMIM612758   616897   
Gene and transcription
Genbank (Entrez)AA811306 AF189251 AK074494 AK296104 AK299163
RefSeq transcript (Entrez)NM_153365
Consensus coding sequences : CCDS (NCBI)TAPT1
Gene ExpressionTAPT1 [ NCBI-GEO ]   TAPT1 [ EBI - ARRAY_EXPRESS ]   TAPT1 [ SEEK ]   TAPT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAPT1 [ Firebrowse - Broad ]
GenevisibleExpression of TAPT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202018
GTEX Portal (Tissue expression)TAPT1
Human Protein AtlasENSG00000169762-TAPT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXT6
PhosPhoSitePlusQ6NXT6
Domains : Interpro (EBI)Tatp1   
Domain families : Pfam (Sanger)DUF747 (PF05346)   
Domain families : Pfam (NCBI)pfam05346   
Conserved Domain (NCBI)TAPT1
SuperfamilyQ6NXT6
AlphaFold pdb e-kbQ6NXT6   
Human Protein Atlas [tissue]ENSG00000169762-TAPT1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6NXT6
IntAct (EBI)Q6NXT6
BioGRIDTAPT1
STRING (EMBL)TAPT1
ZODIACTAPT1
Ontologies - Pathways
QuickGOQ6NXT6
Ontology : AmiGOossification  centrosome  G protein-coupled receptor signaling pathway  neural crest cell development  integral component of membrane  growth hormone-releasing hormone receptor activity  cell projection organization  integral component of endoplasmic reticulum membrane  maintenance of protein localization in endoplasmic reticulum  ciliary basal body  ciliary basal body  positive regulation of cilium assembly  positive regulation of cilium assembly  embryonic skeletal system development  cartilage development  positive regulation of cartilage development  positive regulation of bone development  
Ontology : EGO-EBIossification  centrosome  G protein-coupled receptor signaling pathway  neural crest cell development  integral component of membrane  growth hormone-releasing hormone receptor activity  cell projection organization  integral component of endoplasmic reticulum membrane  maintenance of protein localization in endoplasmic reticulum  ciliary basal body  ciliary basal body  positive regulation of cilium assembly  positive regulation of cilium assembly  embryonic skeletal system development  cartilage development  positive regulation of cartilage development  positive regulation of bone development  
NDEx NetworkTAPT1
Atlas of Cancer Signalling NetworkTAPT1
Wikipedia pathwaysTAPT1
Orthology - Evolution
OrthoDB202018
GeneTree (enSembl)ENSG00000169762
Phylogenetic Trees/Animal Genes : TreeFamTAPT1
Homologs : HomoloGeneTAPT1
Homology/Alignments : Family Browser (UCSC)TAPT1
Gene fusions - Rearrangements
Fusion : MitelmanPROM1/TAPT1 [4p15.32/4p15.32]  
Fusion : MitelmanTAPT1/LDB2 [4p15.32/4p15.32]  
Fusion : QuiverTAPT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAPT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAPT1
dbVarTAPT1
ClinVarTAPT1
MonarchTAPT1
1000_GenomesTAPT1 
Exome Variant ServerTAPT1
GNOMAD BrowserENSG00000169762
Varsome BrowserTAPT1
ACMGTAPT1 variants
VarityQ6NXT6
Genomic Variants (DGV)TAPT1 [DGVbeta]
DECIPHERTAPT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAPT1 
Mutations
ICGC Data PortalTAPT1 
TCGA Data PortalTAPT1 
Broad Tumor PortalTAPT1
OASIS PortalTAPT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAPT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAPT1
Mutations and Diseases : HGMDTAPT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTAPT1
DgiDB (Drug Gene Interaction Database)TAPT1
DoCM (Curated mutations)TAPT1
CIViC (Clinical Interpretations of Variants in Cancer)TAPT1
Cancer3DTAPT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612758    616897   
Orphanet23725   
DisGeNETTAPT1
MedgenTAPT1
Genetic Testing Registry TAPT1
NextProtQ6NXT6 [Medical]
GENETestsTAPT1
Target ValidationTAPT1
Huge Navigator TAPT1 [HugePedia]
ClinGenTAPT1
Clinical trials, drugs, therapy
MyCancerGenomeTAPT1
Protein Interactions : CTDTAPT1
Pharm GKB GenePA162405167
PharosQ6NXT6
Clinical trialTAPT1
Miscellaneous
canSAR (ICR)TAPT1
HarmonizomeTAPT1
DataMed IndexTAPT1
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAPT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:15 CEST 2021

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