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TARM1 (T cell-interacting, activating receptor on myeloid cells 1)

Identity

Other aliasOLT-2
HGNC (Hugo) TARM1
LocusID (NCBI) 441864
Atlas_Id 74480
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54573201 and ends at 54584634 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FXYD3 (19q13.12) / TARM1 (19q13.42)ZNF83 (19q13.41) / TARM1 (19q13.42)FXYD3 TARM1
ZNF83 TARM1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TARM1   37250
Cards
Entrez_Gene (NCBI)TARM1  441864  T cell-interacting, activating receptor on myeloid cells 1
AliasesOLT-2
GeneCards (Weizmann)TARM1
Ensembl hg19 (Hinxton)ENSG00000248385 [Gene_View]  chr19:54573201-54584634 [Contig_View]  TARM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000248385 [Gene_View]  chr19:54573201-54584634 [Contig_View]  TARM1 [Vega]
ICGC DataPortalENSG00000248385
TCGA cBioPortalTARM1
AceView (NCBI)TARM1
Genatlas (Paris)TARM1
WikiGenes441864
SOURCE (Princeton)TARM1
Genetics Home Reference (NIH)TARM1
Genomic and cartography
GoldenPath hg19 (UCSC)TARM1  -     chr19:54573201-54584634 -  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TARM1  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblTARM1 - 19q13.42 [CytoView hg19]  TARM1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBITARM1 [Mapview hg19]  TARM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301730 DQ479398
RefSeq transcript (Entrez)NM_001135686
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NT_187693 NW_003571054 NW_003571055 NW_003571056 NW_003571057 NW_003571058 NW_003571059 NW_003571060 NW_003571061 NW_004929415
Consensus coding sequences : CCDS (NCBI)TARM1
Cluster EST : UnigeneHs.694674 [ NCBI ]
CGAP (NCI)Hs.694674
Alternative Splicing GalleryENSG00000248385
Gene ExpressionTARM1 [ NCBI-GEO ]   TARM1 [ EBI - ARRAY_EXPRESS ]   TARM1 [ SEEK ]   TARM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TARM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441864
GTEX Portal (Tissue expression)TARM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtB6A8C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB6A8C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB6A8C7
Splice isoforms : SwissVarB6A8C7
PhosPhoSitePlusB6A8C7
Domains : Interpro (EBI)Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)TARM1
DMDM Disease mutations441864
Blocks (Seattle)TARM1
SuperfamilyB6A8C7
Human Protein AtlasENSG00000248385
Peptide AtlasB6A8C7
IPIIPI00941874   IPI00909394   
Protein Interaction databases
DIP (DOE-UCLA)B6A8C7
IntAct (EBI)B6A8C7
FunCoupENSG00000248385
BioGRIDTARM1
STRING (EMBL)TARM1
ZODIACTARM1
Ontologies - Pathways
QuickGOB6A8C7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTARM1
Atlas of Cancer Signalling NetworkTARM1
Wikipedia pathwaysTARM1
Orthology - Evolution
OrthoDB441864
GeneTree (enSembl)ENSG00000248385
Phylogenetic Trees/Animal Genes : TreeFamTARM1
HOVERGENB6A8C7
HOGENOMB6A8C7
Homologs : HomoloGeneTARM1
Homology/Alignments : Family Browser (UCSC)TARM1
Gene fusions - Rearrangements
Fusion: TCGAFXYD3 TARM1
Fusion: TCGAZNF83 TARM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTARM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TARM1
dbVarTARM1
ClinVarTARM1
1000_GenomesTARM1 
Exome Variant ServerTARM1
ExAC (Exome Aggregation Consortium)TARM1 (select the gene name)
Genetic variants : HAPMAP441864
Genomic Variants (DGV)TARM1 [DGVbeta]
DECIPHER (Syndromes)19:54573201-54584634  ENSG00000248385
CONAN: Copy Number AnalysisTARM1 
Mutations
ICGC Data PortalTARM1 
TCGA Data PortalTARM1 
Broad Tumor PortalTARM1
OASIS PortalTARM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTARM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTARM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TARM1
DgiDB (Drug Gene Interaction Database)TARM1
DoCM (Curated mutations)TARM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TARM1 (select a term)
intoGenTARM1
Cancer3DTARM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTARM1
Genetic Testing Registry TARM1
NextProtB6A8C7 [Medical]
TSGene441864
GENETestsTARM1
Huge Navigator TARM1 [HugePedia]
snp3D : Map Gene to Disease441864
BioCentury BCIQTARM1
ClinGenTARM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441864
Chemical/Pharm GKB GenePA165394443
Clinical trialTARM1
Miscellaneous
canSAR (ICR)TARM1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTARM1
EVEXTARM1
GoPubMedTARM1
iHOPTARM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:24 CET 2017

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