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TARM1 (T cell-interacting, activating receptor on myeloid cells 1)

Identity

Alias (NCBI)OLT-2
HGNC (Hugo) TARM1
LocusID (NCBI) 441864
Atlas_Id 74480
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54069895 and ends at 54076545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FXYD3 (19q13.12) / TARM1 (19q13.42)ZNF83 (19q13.41) / TARM1 (19q13.42)FXYD3 TARM1
ZNF83 TARM1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TARM1   37250
Cards
Entrez_Gene (NCBI)TARM1    T cell-interacting, activating receptor on myeloid cells 1
AliasesOLT-2
GeneCards (Weizmann)TARM1
Ensembl hg19 (Hinxton)ENSG00000248385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248385 [Gene_View]  ENSG00000248385 [Sequence]  chr19:54069895-54076545 [Contig_View]  TARM1 [Vega]
ICGC DataPortalENSG00000248385
TCGA cBioPortalTARM1
AceView (NCBI)TARM1
Genatlas (Paris)TARM1
SOURCE (Princeton)TARM1
Genetics Home Reference (NIH)TARM1
Genomic and cartography
GoldenPath hg38 (UCSC)TARM1  -     chr19:54069895-54076545 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TARM1  -     19q13.42   [Description]    (hg19-Feb_2009)
GoldenPathTARM1 - 19q13.42 [CytoView hg19]  TARM1 - 19q13.42 [CytoView hg38]
ImmunoBaseENSG00000248385
Genome Data Viewer NCBITARM1 [Mapview hg19]  
OMIM616802   
Gene and transcription
Genbank (Entrez)AK301730 DQ479398
RefSeq transcript (Entrez)NM_001135686 NM_001330650
Consensus coding sequences : CCDS (NCBI)TARM1
Gene ExpressionTARM1 [ NCBI-GEO ]   TARM1 [ EBI - ARRAY_EXPRESS ]   TARM1 [ SEEK ]   TARM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TARM1 [ Firebrowse - Broad ]
GenevisibleExpression of TARM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441864
GTEX Portal (Tissue expression)TARM1
Human Protein AtlasENSG00000248385-TARM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB6A8C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB6A8C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB6A8C7
PhosPhoSitePlusB6A8C7
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)TARM1
SuperfamilyB6A8C7
AlphaFold pdb e-kbB6A8C7   
Human Protein Atlas [tissue]ENSG00000248385-TARM1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)B6A8C7
IntAct (EBI)B6A8C7
BioGRIDTARM1
STRING (EMBL)TARM1
ZODIACTARM1
Ontologies - Pathways
QuickGOB6A8C7
Ontology : AmiGOadaptive immune response  plasma membrane  plasma membrane  integral component of membrane  immunoglobulin receptor binding  specific granule membrane  neutrophil degranulation  innate immune response  tertiary granule membrane  negative regulation of CD4-positive, alpha-beta T cell activation  
Ontology : EGO-EBIadaptive immune response  plasma membrane  plasma membrane  integral component of membrane  immunoglobulin receptor binding  specific granule membrane  neutrophil degranulation  innate immune response  tertiary granule membrane  negative regulation of CD4-positive, alpha-beta T cell activation  
NDEx NetworkTARM1
Atlas of Cancer Signalling NetworkTARM1
Wikipedia pathwaysTARM1
Orthology - Evolution
OrthoDB441864
GeneTree (enSembl)ENSG00000248385
Phylogenetic Trees/Animal Genes : TreeFamTARM1
Homologs : HomoloGeneTARM1
Homology/Alignments : Family Browser (UCSC)TARM1
Gene fusions - Rearrangements
Fusion : QuiverTARM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTARM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TARM1
dbVarTARM1
ClinVarTARM1
MonarchTARM1
1000_GenomesTARM1 
Exome Variant ServerTARM1
GNOMAD BrowserENSG00000248385
Varsome BrowserTARM1
ACMGTARM1 variants
VarityB6A8C7
Genomic Variants (DGV)TARM1 [DGVbeta]
DECIPHERTARM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTARM1 
Mutations
ICGC Data PortalTARM1 
TCGA Data PortalTARM1 
Broad Tumor PortalTARM1
OASIS PortalTARM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTARM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTARM1
Mutations and Diseases : HGMDTARM1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTARM1
DgiDB (Drug Gene Interaction Database)TARM1
DoCM (Curated mutations)TARM1
CIViC (Clinical Interpretations of Variants in Cancer)TARM1
Cancer3DTARM1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616802   
Orphanet
DisGeNETTARM1
MedgenTARM1
Genetic Testing Registry TARM1
NextProtB6A8C7 [Medical]
GENETestsTARM1
Target ValidationTARM1
Huge Navigator TARM1 [HugePedia]
ClinGenTARM1
Clinical trials, drugs, therapy
MyCancerGenomeTARM1
Protein Interactions : CTDTARM1
Pharm GKB GenePA165394443
PharosB6A8C7
Clinical trialTARM1
Miscellaneous
canSAR (ICR)TARM1
HarmonizomeTARM1
DataMed IndexTARM1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTARM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:50 CEST 2021

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