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TAS2R1 (taste 2 receptor member 1)

Identity

Alias_namestaste receptor
Alias_symbol (synonym)T2R1
TRB7
Other alias
HGNC (Hugo) TAS2R1
LocusID (NCBI) 50834
Atlas_Id 54686
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 9629109 and ends at 9630463 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NIPBL (5p13.2) / TAS2R1 (5p15.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAS2R1   14909
Cards
Entrez_Gene (NCBI)TAS2R1  50834  taste 2 receptor member 1
AliasesT2R1; TRB7
GeneCards (Weizmann)TAS2R1
Ensembl hg19 (Hinxton)ENSG00000169777 [Gene_View]  chr5:9629109-9630463 [Contig_View]  TAS2R1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169777 [Gene_View]  chr5:9629109-9630463 [Contig_View]  TAS2R1 [Vega]
ICGC DataPortalENSG00000169777
TCGA cBioPortalTAS2R1
AceView (NCBI)TAS2R1
Genatlas (Paris)TAS2R1
WikiGenes50834
SOURCE (Princeton)TAS2R1
Genetics Home Reference (NIH)TAS2R1
Genomic and cartography
GoldenPath hg19 (UCSC)TAS2R1  -     chr5:9629109-9630463 -  5p15.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAS2R1  -     5p15.31   [Description]    (hg38-Dec_2013)
EnsemblTAS2R1 - 5p15.31 [CytoView hg19]  TAS2R1 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBITAS2R1 [Mapview hg19]  TAS2R1 [Mapview hg38]
OMIM604796   
Gene and transcription
Genbank (Entrez)BC095521 BC101729 BC101731
RefSeq transcript (Entrez)NM_019599
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)TAS2R1
Cluster EST : UnigeneHs.567492 [ NCBI ]
CGAP (NCI)Hs.567492
Alternative Splicing GalleryENSG00000169777
Gene ExpressionTAS2R1 [ NCBI-GEO ]   TAS2R1 [ EBI - ARRAY_EXPRESS ]   TAS2R1 [ SEEK ]   TAS2R1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50834
GTEX Portal (Tissue expression)TAS2R1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYW7
Splice isoforms : SwissVarQ9NYW7
PhosPhoSitePlusQ9NYW7
Domains : Interpro (EBI)T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R1
DMDM Disease mutations50834
Blocks (Seattle)TAS2R1
SuperfamilyQ9NYW7
Human Protein AtlasENSG00000169777
Peptide AtlasQ9NYW7
HPRD07267
IPIIPI00021300   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYW7
IntAct (EBI)Q9NYW7
FunCoupENSG00000169777
BioGRIDTAS2R1
STRING (EMBL)TAS2R1
ZODIACTAS2R1
Ontologies - Pathways
QuickGOQ9NYW7
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  plasma membrane  G-protein coupled receptor signaling pathway  chemosensory behavior  taste receptor activity  integral component of membrane  integral component of membrane  bitter taste receptor activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  plasma membrane  G-protein coupled receptor signaling pathway  chemosensory behavior  taste receptor activity  integral component of membrane  integral component of membrane  bitter taste receptor activity  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R1
Atlas of Cancer Signalling NetworkTAS2R1
Wikipedia pathwaysTAS2R1
Orthology - Evolution
OrthoDB50834
GeneTree (enSembl)ENSG00000169777
Phylogenetic Trees/Animal Genes : TreeFamTAS2R1
HOVERGENQ9NYW7
HOGENOMQ9NYW7
Homologs : HomoloGeneTAS2R1
Homology/Alignments : Family Browser (UCSC)TAS2R1
Gene fusions - Rearrangements
Fusion : MitelmanNIPBL/TAS2R1 [5p13.2/5p15.31]  [t(5;5)(p13;p15)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R1
dbVarTAS2R1
ClinVarTAS2R1
1000_GenomesTAS2R1 
Exome Variant ServerTAS2R1
ExAC (Exome Aggregation Consortium)TAS2R1 (select the gene name)
Genetic variants : HAPMAP50834
Genomic Variants (DGV)TAS2R1 [DGVbeta]
DECIPHER (Syndromes)5:9629109-9630463  ENSG00000169777
CONAN: Copy Number AnalysisTAS2R1 
Mutations
ICGC Data PortalTAS2R1 
TCGA Data PortalTAS2R1 
Broad Tumor PortalTAS2R1
OASIS PortalTAS2R1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAS2R1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R1
DgiDB (Drug Gene Interaction Database)TAS2R1
DoCM (Curated mutations)TAS2R1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R1 (select a term)
intoGenTAS2R1
Cancer3DTAS2R1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604796   
Orphanet
MedgenTAS2R1
Genetic Testing Registry TAS2R1
NextProtQ9NYW7 [Medical]
TSGene50834
GENETestsTAS2R1
Huge Navigator TAS2R1 [HugePedia]
snp3D : Map Gene to Disease50834
BioCentury BCIQTAS2R1
ClinGenTAS2R1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50834
Chemical/Pharm GKB GenePA37921
Clinical trialTAS2R1
Miscellaneous
canSAR (ICR)TAS2R1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R1
EVEXTAS2R1
GoPubMedTAS2R1
iHOPTAS2R1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:49 CEST 2017

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