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TAS2R13 (taste 2 receptor member 13)

Identity

Alias_namestaste receptor, type 2, member 13
Alias_symbol (synonym)T2R13
TRB3
Other alias
HGNC (Hugo) TAS2R13
LocusID (NCBI) 50838
Atlas_Id 74488
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10907926 and ends at 10909562 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAS2R13   14919
Cards
Entrez_Gene (NCBI)TAS2R13  50838  taste 2 receptor member 13
AliasesT2R13; TRB3
GeneCards (Weizmann)TAS2R13
Ensembl hg19 (Hinxton)ENSG00000212128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212128 [Gene_View]  chr12:10907926-10909562 [Contig_View]  TAS2R13 [Vega]
ICGC DataPortalENSG00000212128
TCGA cBioPortalTAS2R13
AceView (NCBI)TAS2R13
Genatlas (Paris)TAS2R13
WikiGenes50838
SOURCE (Princeton)TAS2R13
Genetics Home Reference (NIH)TAS2R13
Genomic and cartography
GoldenPath hg38 (UCSC)TAS2R13  -     chr12:10907926-10909562 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAS2R13  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblTAS2R13 - 12p13.2 [CytoView hg19]  TAS2R13 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBITAS2R13 [Mapview hg19]  TAS2R13 [Mapview hg38]
OMIM604792   
Gene and transcription
Genbank (Entrez)BC069376 BC095518 BC115402 BC115403 HQ448415
RefSeq transcript (Entrez)NM_023920
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187658 NW_003571050
Consensus coding sequences : CCDS (NCBI)TAS2R13
Cluster EST : UnigeneHs.679407 [ NCBI ]
CGAP (NCI)Hs.679407
Alternative Splicing GalleryENSG00000212128
Gene ExpressionTAS2R13 [ NCBI-GEO ]   TAS2R13 [ EBI - ARRAY_EXPRESS ]   TAS2R13 [ SEEK ]   TAS2R13 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50838
GTEX Portal (Tissue expression)TAS2R13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYV9
Splice isoforms : SwissVarQ9NYV9
PhosPhoSitePlusQ9NYV9
Domains : Interpro (EBI)T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R13
DMDM Disease mutations50838
Blocks (Seattle)TAS2R13
SuperfamilyQ9NYV9
Human Protein AtlasENSG00000212128
Peptide AtlasQ9NYV9
HPRD11991
IPIIPI00028332   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYV9
IntAct (EBI)Q9NYV9
FunCoupENSG00000212128
BioGRIDTAS2R13
STRING (EMBL)TAS2R13
ZODIACTAS2R13
Ontologies - Pathways
QuickGOQ9NYV9
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  taste receptor activity  integral component of membrane  positive regulation of cytokinesis  bitter taste receptor activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  taste receptor activity  integral component of membrane  positive regulation of cytokinesis  bitter taste receptor activity  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R13
Atlas of Cancer Signalling NetworkTAS2R13
Wikipedia pathwaysTAS2R13
Orthology - Evolution
OrthoDB50838
GeneTree (enSembl)ENSG00000212128
Phylogenetic Trees/Animal Genes : TreeFamTAS2R13
HOVERGENQ9NYV9
HOGENOMQ9NYV9
Homologs : HomoloGeneTAS2R13
Homology/Alignments : Family Browser (UCSC)TAS2R13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R13
dbVarTAS2R13
ClinVarTAS2R13
1000_GenomesTAS2R13 
Exome Variant ServerTAS2R13
ExAC (Exome Aggregation Consortium)TAS2R13 (select the gene name)
Genetic variants : HAPMAP50838
Genomic Variants (DGV)TAS2R13 [DGVbeta]
DECIPHERTAS2R13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAS2R13 
Mutations
ICGC Data PortalTAS2R13 
TCGA Data PortalTAS2R13 
Broad Tumor PortalTAS2R13
OASIS PortalTAS2R13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAS2R13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R13
DgiDB (Drug Gene Interaction Database)TAS2R13
DoCM (Curated mutations)TAS2R13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R13 (select a term)
intoGenTAS2R13
Cancer3DTAS2R13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604792   
Orphanet
MedgenTAS2R13
Genetic Testing Registry TAS2R13
NextProtQ9NYV9 [Medical]
TSGene50838
GENETestsTAS2R13
Target ValidationTAS2R13
Huge Navigator TAS2R13 [HugePedia]
snp3D : Map Gene to Disease50838
BioCentury BCIQTAS2R13
ClinGenTAS2R13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50838
Chemical/Pharm GKB GenePA37929
Clinical trialTAS2R13
Miscellaneous
canSAR (ICR)TAS2R13 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R13
EVEXTAS2R13
GoPubMedTAS2R13
iHOPTAS2R13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:58 CEST 2017

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