Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAS2R38 (taste 2 receptor member 38)

Identity

Alias_namesPTC
phenylthiocarbamide tasting
taste receptor, type 2, member 38
Alias_symbol (synonym)T2R61
Other aliasT2R38
HGNC (Hugo) TAS2R38
LocusID (NCBI) 5726
Atlas_Id 42471
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 141972631 and ends at 141973773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RET (10q11.21) / TAS2R38 (7q34)SPINK1 (5q32) / TAS2R38 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAS2R38   9584
Cards
Entrez_Gene (NCBI)TAS2R38  5726  taste 2 receptor member 38
AliasesPTC; T2R38; T2R61
GeneCards (Weizmann)TAS2R38
Ensembl hg19 (Hinxton)ENSG00000257138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257138 [Gene_View]  chr7:141972631-141973773 [Contig_View]  TAS2R38 [Vega]
ICGC DataPortalENSG00000257138
TCGA cBioPortalTAS2R38
AceView (NCBI)TAS2R38
Genatlas (Paris)TAS2R38
WikiGenes5726
SOURCE (Princeton)TAS2R38
Genetics Home Reference (NIH)TAS2R38
Genomic and cartography
GoldenPath hg38 (UCSC)TAS2R38  -     chr7:141972631-141973773 -  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAS2R38  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblTAS2R38 - 7q34 [CytoView hg19]  TAS2R38 - 7q34 [CytoView hg38]
Mapping of homologs : NCBITAS2R38 [Mapview hg19]  TAS2R38 [Mapview hg38]
OMIM171200   607751   
Gene and transcription
Genbank (Entrez)BC104933 BC104937
RefSeq transcript (Entrez)NM_176817
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAS2R38
Cluster EST : UnigeneHs.647085 [ NCBI ]
CGAP (NCI)Hs.647085
Alternative Splicing GalleryENSG00000257138
Gene ExpressionTAS2R38 [ NCBI-GEO ]   TAS2R38 [ EBI - ARRAY_EXPRESS ]   TAS2R38 [ SEEK ]   TAS2R38 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5726
GTEX Portal (Tissue expression)TAS2R38
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59533   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59533  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59533
Splice isoforms : SwissVarP59533
PhosPhoSitePlusP59533
Domains : Interpro (EBI)T2R    TAS2R38   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R38
DMDM Disease mutations5726
Blocks (Seattle)TAS2R38
SuperfamilyP59533
Human Protein AtlasENSG00000257138
Peptide AtlasP59533
HPRD09672
IPIIPI00249602   
Protein Interaction databases
DIP (DOE-UCLA)P59533
IntAct (EBI)P59533
FunCoupENSG00000257138
BioGRIDTAS2R38
STRING (EMBL)TAS2R38
ZODIACTAS2R38
Ontologies - Pathways
QuickGOP59533
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R38
Atlas of Cancer Signalling NetworkTAS2R38
Wikipedia pathwaysTAS2R38
Orthology - Evolution
OrthoDB5726
GeneTree (enSembl)ENSG00000257138
Phylogenetic Trees/Animal Genes : TreeFamTAS2R38
HOVERGENP59533
HOGENOMP59533
Homologs : HomoloGeneTAS2R38
Homology/Alignments : Family Browser (UCSC)TAS2R38
Gene fusions - Rearrangements
Fusion Cancer (Beijing)SPINK1 [5q32]  -  TAS2R38 [7q34]  [FUSC003180]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R38
dbVarTAS2R38
ClinVarTAS2R38
1000_GenomesTAS2R38 
Exome Variant ServerTAS2R38
ExAC (Exome Aggregation Consortium)TAS2R38 (select the gene name)
Genetic variants : HAPMAP5726
Genomic Variants (DGV)TAS2R38 [DGVbeta]
DECIPHERTAS2R38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAS2R38 
Mutations
ICGC Data PortalTAS2R38 
TCGA Data PortalTAS2R38 
Broad Tumor PortalTAS2R38
OASIS PortalTAS2R38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAS2R38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch TAS2R38
DgiDB (Drug Gene Interaction Database)TAS2R38
DoCM (Curated mutations)TAS2R38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R38 (select a term)
intoGenTAS2R38
Cancer3DTAS2R38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM171200    607751   
Orphanet
MedgenTAS2R38
Genetic Testing Registry TAS2R38
NextProtP59533 [Medical]
TSGene5726
GENETestsTAS2R38
Target ValidationTAS2R38
Huge Navigator TAS2R38 [HugePedia]
snp3D : Map Gene to Disease5726
BioCentury BCIQTAS2R38
ClinGenTAS2R38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5726
Chemical/Pharm GKB GenePA33936
Clinical trialTAS2R38
Miscellaneous
canSAR (ICR)TAS2R38 (select the gene name)
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R38
EVEXTAS2R38
GoPubMedTAS2R38
iHOPTAS2R38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:58:35 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.