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TAS2R39 (taste 2 receptor member 39)

Identity

Alias_namestaste receptor, type 2, member 39
Other aliasT2R39
T2R57
HGNC (Hugo) TAS2R39
LocusID (NCBI) 259285
Atlas_Id 74495
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 143183419 and ends at 143184435 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAS2R39   18886
Cards
Entrez_Gene (NCBI)TAS2R39  259285  taste 2 receptor member 39
AliasesT2R39; T2R57
GeneCards (Weizmann)TAS2R39
Ensembl hg19 (Hinxton)ENSG00000236398 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236398 [Gene_View]  chr7:143183419-143184435 [Contig_View]  TAS2R39 [Vega]
ICGC DataPortalENSG00000236398
TCGA cBioPortalTAS2R39
AceView (NCBI)TAS2R39
Genatlas (Paris)TAS2R39
WikiGenes259285
SOURCE (Princeton)TAS2R39
Genetics Home Reference (NIH)TAS2R39
Genomic and cartography
GoldenPath hg38 (UCSC)TAS2R39  -     chr7:143183419-143184435 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAS2R39  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblTAS2R39 - 7q34 [CytoView hg19]  TAS2R39 - 7q34 [CytoView hg38]
Mapping of homologs : NCBITAS2R39 [Mapview hg19]  TAS2R39 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC100947 BC100948 BC114952 BC160088
RefSeq transcript (Entrez)NM_176881
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAS2R39
Cluster EST : UnigeneHs.553660 [ NCBI ]
CGAP (NCI)Hs.553660
Alternative Splicing GalleryENSG00000236398
Gene ExpressionTAS2R39 [ NCBI-GEO ]   TAS2R39 [ EBI - ARRAY_EXPRESS ]   TAS2R39 [ SEEK ]   TAS2R39 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259285
GTEX Portal (Tissue expression)TAS2R39
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59534   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59534  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59534
Splice isoforms : SwissVarP59534
PhosPhoSitePlusP59534
Domains : Interpro (EBI)T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R39
DMDM Disease mutations259285
Blocks (Seattle)TAS2R39
PDB (SRS)2GFZ   
PDB (PDBSum)2GFZ   
PDB (IMB)2GFZ   
PDB (RSDB)2GFZ   
Structural Biology KnowledgeBase2GFZ   
SCOP (Structural Classification of Proteins)2GFZ   
CATH (Classification of proteins structures)2GFZ   
SuperfamilyP59534
Human Protein AtlasENSG00000236398
Peptide AtlasP59534
HPRD18149
IPIIPI00470540   
Protein Interaction databases
DIP (DOE-UCLA)P59534
IntAct (EBI)P59534
FunCoupENSG00000236398
BioGRIDTAS2R39
STRING (EMBL)TAS2R39
ZODIACTAS2R39
Ontologies - Pathways
QuickGOP59534
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R39
Atlas of Cancer Signalling NetworkTAS2R39
Wikipedia pathwaysTAS2R39
Orthology - Evolution
OrthoDB259285
GeneTree (enSembl)ENSG00000236398
Phylogenetic Trees/Animal Genes : TreeFamTAS2R39
HOVERGENP59534
HOGENOMP59534
Homologs : HomoloGeneTAS2R39
Homology/Alignments : Family Browser (UCSC)TAS2R39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R39
dbVarTAS2R39
ClinVarTAS2R39
1000_GenomesTAS2R39 
Exome Variant ServerTAS2R39
ExAC (Exome Aggregation Consortium)TAS2R39 (select the gene name)
Genetic variants : HAPMAP259285
Genomic Variants (DGV)TAS2R39 [DGVbeta]
DECIPHERTAS2R39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAS2R39 
Mutations
ICGC Data PortalTAS2R39 
TCGA Data PortalTAS2R39 
Broad Tumor PortalTAS2R39
OASIS PortalTAS2R39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAS2R39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R39
DgiDB (Drug Gene Interaction Database)TAS2R39
DoCM (Curated mutations)TAS2R39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R39 (select a term)
intoGenTAS2R39
Cancer3DTAS2R39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTAS2R39
Genetic Testing Registry TAS2R39
NextProtP59534 [Medical]
TSGene259285
GENETestsTAS2R39
Huge Navigator TAS2R39 [HugePedia]
snp3D : Map Gene to Disease259285
BioCentury BCIQTAS2R39
ClinGenTAS2R39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259285
Chemical/Pharm GKB GenePA38739
Clinical trialTAS2R39
Miscellaneous
canSAR (ICR)TAS2R39 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R39
EVEXTAS2R39
GoPubMedTAS2R39
iHOPTAS2R39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:23 CEST 2017

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