Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAS2R43 (taste receptor, type 2, member 43)

Identity

Alias_namestaste receptor, type 2, member 43
Alias_symbol (synonym)T2R52
Other aliasT2R43
HGNC (Hugo) TAS2R43
LocusID (NCBI) 259289
Atlas_Id 74500
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 11243886 and ends at 11244912 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAS2R43   18875
Cards
Entrez_Gene (NCBI)TAS2R43  259289  taste receptor, type 2, member 43
AliasesT2R43; T2R52
GeneCards (Weizmann)TAS2R43
Ensembl hg19 (Hinxton)ENSG00000255374 [Gene_View]  chr12:11243886-11244912 [Contig_View]  TAS2R43 [Vega]
Ensembl hg38 (Hinxton)ENSG00000255374 [Gene_View]  chr12:11243886-11244912 [Contig_View]  TAS2R43 [Vega]
ICGC DataPortalENSG00000255374
TCGA cBioPortalTAS2R43
AceView (NCBI)TAS2R43
Genatlas (Paris)TAS2R43
WikiGenes259289
SOURCE (Princeton)TAS2R43
Genetics Home Reference (NIH)TAS2R43
Genomic and cartography
GoldenPath hg19 (UCSC)TAS2R43  -     chr12:11243886-11244912 -  12p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAS2R43  -     12p13.2   [Description]    (hg38-Dec_2013)
EnsemblTAS2R43 - 12p13.2 [CytoView hg19]  TAS2R43 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBITAS2R43 [Mapview hg19]  TAS2R43 [Mapview hg38]
OMIM612668   
Gene and transcription
Genbank (Entrez)BC101155 BC117423
RefSeq transcript (Entrez)NM_176884
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NT_187658 NW_003571050 NW_004929383
Consensus coding sequences : CCDS (NCBI)TAS2R43
Cluster EST : UnigeneHs.688195 [ NCBI ]
CGAP (NCI)Hs.688195
Alternative Splicing GalleryENSG00000255374
Gene ExpressionTAS2R43 [ NCBI-GEO ]   TAS2R43 [ EBI - ARRAY_EXPRESS ]   TAS2R43 [ SEEK ]   TAS2R43 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259289
GTEX Portal (Tissue expression)TAS2R43
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59537   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59537  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59537
Splice isoforms : SwissVarP59537
PhosPhoSitePlusP59537
Domains : Interpro (EBI)T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R43
DMDM Disease mutations259289
Blocks (Seattle)TAS2R43
SuperfamilyP59537
Human Protein AtlasENSG00000255374
Peptide AtlasP59537
HPRD18152
IPIIPI00259669   
Protein Interaction databases
DIP (DOE-UCLA)P59537
IntAct (EBI)P59537
FunCoupENSG00000255374
BioGRIDTAS2R43
STRING (EMBL)TAS2R43
ZODIACTAS2R43
Ontologies - Pathways
QuickGOP59537
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  plasma membrane  G-protein coupled receptor signaling pathway  taste receptor activity  integral component of membrane  motile cilium  bitter taste receptor activity  ciliary membrane  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  plasma membrane  G-protein coupled receptor signaling pathway  taste receptor activity  integral component of membrane  motile cilium  bitter taste receptor activity  ciliary membrane  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R43
Atlas of Cancer Signalling NetworkTAS2R43
Wikipedia pathwaysTAS2R43
Orthology - Evolution
OrthoDB259289
GeneTree (enSembl)ENSG00000255374
Phylogenetic Trees/Animal Genes : TreeFamTAS2R43
HOVERGENP59537
HOGENOMP59537
Homologs : HomoloGeneTAS2R43
Homology/Alignments : Family Browser (UCSC)TAS2R43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R43
dbVarTAS2R43
ClinVarTAS2R43
1000_GenomesTAS2R43 
Exome Variant ServerTAS2R43
ExAC (Exome Aggregation Consortium)TAS2R43 (select the gene name)
Genetic variants : HAPMAP259289
Genomic Variants (DGV)TAS2R43 [DGVbeta]
DECIPHER (Syndromes)12:11243886-11244912  ENSG00000255374
CONAN: Copy Number AnalysisTAS2R43 
Mutations
ICGC Data PortalTAS2R43 
TCGA Data PortalTAS2R43 
Broad Tumor PortalTAS2R43
OASIS PortalTAS2R43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAS2R43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R43
DgiDB (Drug Gene Interaction Database)TAS2R43
DoCM (Curated mutations)TAS2R43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R43 (select a term)
intoGenTAS2R43
Cancer3DTAS2R43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612668   
Orphanet
MedgenTAS2R43
Genetic Testing Registry TAS2R43
NextProtP59537 [Medical]
TSGene259289
GENETestsTAS2R43
Huge Navigator TAS2R43 [HugePedia]
snp3D : Map Gene to Disease259289
BioCentury BCIQTAS2R43
ClinGenTAS2R43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259289
Chemical/Pharm GKB GenePA38729
Clinical trialTAS2R43
Miscellaneous
canSAR (ICR)TAS2R43 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R43
EVEXTAS2R43
GoPubMedTAS2R43
iHOPTAS2R43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:28 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.