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TAS2R50 (taste 2 receptor member 50)

Identity

Alias_namestaste receptor, type 2, member 50
Alias_symbol (synonym)T2R51
Other aliasT2R50
TAS2R51
HGNC (Hugo) TAS2R50
LocusID (NCBI) 259296
Atlas_Id 74503
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10985913 and ends at 10986912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAS2R50   18882
Cards
Entrez_Gene (NCBI)TAS2R50  259296  taste 2 receptor member 50
AliasesT2R50; T2R51; TAS2R51
GeneCards (Weizmann)TAS2R50
Ensembl hg19 (Hinxton)ENSG00000212126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212126 [Gene_View]  chr12:10985913-10986912 [Contig_View]  TAS2R50 [Vega]
ICGC DataPortalENSG00000212126
TCGA cBioPortalTAS2R50
AceView (NCBI)TAS2R50
Genatlas (Paris)TAS2R50
WikiGenes259296
SOURCE (Princeton)TAS2R50
Genetics Home Reference (NIH)TAS2R50
Genomic and cartography
GoldenPath hg38 (UCSC)TAS2R50  -     chr12:10985913-10986912 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAS2R50  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblTAS2R50 - 12p13.2 [CytoView hg19]  TAS2R50 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBITAS2R50 [Mapview hg19]  TAS2R50 [Mapview hg38]
OMIM609627   
Gene and transcription
Genbank (Entrez)BC112100
RefSeq transcript (Entrez)NM_176890
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187658 NW_003571050
Consensus coding sequences : CCDS (NCBI)TAS2R50
Cluster EST : UnigeneHs.688194 [ NCBI ]
CGAP (NCI)Hs.688194
Alternative Splicing GalleryENSG00000212126
Gene ExpressionTAS2R50 [ NCBI-GEO ]   TAS2R50 [ EBI - ARRAY_EXPRESS ]   TAS2R50 [ SEEK ]   TAS2R50 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259296
GTEX Portal (Tissue expression)TAS2R50
Human Protein AtlasENSG00000212126-TAS2R50 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59544   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59544  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59544
Splice isoforms : SwissVarP59544
PhosPhoSitePlusP59544
Domains : Interpro (EBI)T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R50
DMDM Disease mutations259296
Blocks (Seattle)TAS2R50
SuperfamilyP59544
Human Protein Atlas [tissue]ENSG00000212126-TAS2R50 [tissue]
Peptide AtlasP59544
HPRD18158
IPIIPI00259693   
Protein Interaction databases
DIP (DOE-UCLA)P59544
IntAct (EBI)P59544
FunCoupENSG00000212126
BioGRIDTAS2R50
STRING (EMBL)TAS2R50
ZODIACTAS2R50
Ontologies - Pathways
QuickGOP59544
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R50
Atlas of Cancer Signalling NetworkTAS2R50
Wikipedia pathwaysTAS2R50
Orthology - Evolution
OrthoDB259296
GeneTree (enSembl)ENSG00000212126
Phylogenetic Trees/Animal Genes : TreeFamTAS2R50
HOVERGENP59544
HOGENOMP59544
Homologs : HomoloGeneTAS2R50
Homology/Alignments : Family Browser (UCSC)TAS2R50
Gene fusions - Rearrangements
Fusion: Tumor Portal TAS2R50
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R50
dbVarTAS2R50
ClinVarTAS2R50
1000_GenomesTAS2R50 
Exome Variant ServerTAS2R50
ExAC (Exome Aggregation Consortium)ENSG00000212126
GNOMAD BrowserENSG00000212126
Genetic variants : HAPMAP259296
Genomic Variants (DGV)TAS2R50 [DGVbeta]
DECIPHERTAS2R50 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAS2R50 
Mutations
ICGC Data PortalTAS2R50 
TCGA Data PortalTAS2R50 
Broad Tumor PortalTAS2R50
OASIS PortalTAS2R50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAS2R50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R50
DgiDB (Drug Gene Interaction Database)TAS2R50
DoCM (Curated mutations)TAS2R50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R50 (select a term)
intoGenTAS2R50
Cancer3DTAS2R50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609627   
Orphanet
MedgenTAS2R50
Genetic Testing Registry TAS2R50
NextProtP59544 [Medical]
TSGene259296
GENETestsTAS2R50
Target ValidationTAS2R50
Huge Navigator TAS2R50 [HugePedia]
snp3D : Map Gene to Disease259296
BioCentury BCIQTAS2R50
ClinGenTAS2R50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259296
Chemical/Pharm GKB GenePA38736
Clinical trialTAS2R50
Miscellaneous
canSAR (ICR)TAS2R50 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R50
EVEXTAS2R50
GoPubMedTAS2R50
iHOPTAS2R50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:31:46 CET 2017

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