Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAS2R9 (taste 2 receptor member 9)

Identity

Alias_namestaste receptor, type 2, member 9
Alias_symbol (synonym)T2R9
TRB6
Other alias
HGNC (Hugo) TAS2R9
LocusID (NCBI) 50835
Atlas_Id 74507
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10809094 and ends at 10810168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TAS2R9   14917
Cards
Entrez_Gene (NCBI)TAS2R9  50835  taste 2 receptor member 9
AliasesT2R9; TRB6
GeneCards (Weizmann)TAS2R9
Ensembl hg19 (Hinxton)ENSG00000121381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121381 [Gene_View]  chr12:10809094-10810168 [Contig_View]  TAS2R9 [Vega]
ICGC DataPortalENSG00000121381
TCGA cBioPortalTAS2R9
AceView (NCBI)TAS2R9
Genatlas (Paris)TAS2R9
WikiGenes50835
SOURCE (Princeton)TAS2R9
Genetics Home Reference (NIH)TAS2R9
Genomic and cartography
GoldenPath hg38 (UCSC)TAS2R9  -     chr12:10809094-10810168 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAS2R9  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblTAS2R9 - 12p13.2 [CytoView hg19]  TAS2R9 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBITAS2R9 [Mapview hg19]  TAS2R9 [Mapview hg38]
OMIM604795   
Gene and transcription
Genbank (Entrez)BC069066 BC095519
RefSeq transcript (Entrez)NM_023917
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187658 NW_003571050
Consensus coding sequences : CCDS (NCBI)TAS2R9
Cluster EST : UnigeneHs.272391 [ NCBI ]
CGAP (NCI)Hs.272391
Alternative Splicing GalleryENSG00000121381
Gene ExpressionTAS2R9 [ NCBI-GEO ]   TAS2R9 [ EBI - ARRAY_EXPRESS ]   TASrR9>/a> [ SEEK ]   TAS2R9 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50835
GTEX Portal (Tissue expression)TAS2R9
Human Protein AtlasENSG00000121381-TAS2R9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYW1
Splice isoforms : SwissVarQ9NYW1
PhosPhoSitePlusQ9NYW1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R9
DMDM Disease mutations50835
Blocks (Seattle)TAS2R9
SuperfamilyQ9NYW1
Human Protein Atlas [tissue]ENSG00000121381-TAS2R9 [tissue]
Peptide AtlasQ9NYW1
HPRD07266
IPIIPI00028323   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYW1
IntAct (EBI)Q9NYW1
FunCoupENSG00000121381
BioGRIDTAS2R9
STRING (EMBL)TAS2R9
ZODIACTAS2R9
Ontologies - Pathways
QuickGOQ9NYW1
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  biological_process  taste receptor activity  integral component of membrane  detection of chemical stimulus involved in sensory perception of taste  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  biological_process  taste receptor activity  integral component of membrane  detection of chemical stimulus involved in sensory perception of taste  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R9
Atlas of Cancer Signalling NetworkTAS2R9
Wikipedia pathwaysTAS2R9
Orthology - Evolution
OrthoDB50835
GeneTree (enSembl)ENSG00000121381
Phylogenetic Trees/Animal Genes : TreeFamTAS2R9
HOVERGENQ9NYW1
HOGENOMQ9NYW1
Homologs : HomoloGeneTAS2R9
Homology/Alignments : Family Browser (UCSC)TAS2R9
Gene fusions - Rearrangements
Fusion: Tumor Portal TAS2R9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R9
dbVarTAS2R9
ClinVarTAS2R9
1000_GenomesTAS2R9 
Exome Variant ServerTAS2R9
ExAC (Exome Aggregation Consortium)ENSG00000121381
GNOMAD BrowserENSG00000121381
Genetic variants : HAPMAP50835
Genomic Variants (DGV)TAS2R9 [DGVbeta]
DECIPHERTAS2R9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAS2R9 
Mutations
ICGC Data PortalTAS2R9 
TCGA Data PortalTAS2R9 
Broad Tumor PortalTAS2R9
OASIS PortalTAS2R9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTAS2R9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R9
DgiDB (Drug Gene Interaction Database)TAS2R9
DoCM (Curated mutations)TAS2R9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R9 (select a term)
intoGenTAS2R9
Cancer3DTAS2R9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604795   
Orphanet
MedgenTAS2R9
Genetic Testing Registry TAS2R9
NextProtQ9NYW1 [Medical]
TSGene50835
GENETestsTAS2R9
Target ValidationTAS2R9
Huge Navigator TAS2R9 [HugePedia]
snp3D : Map Gene to Disease50835
BioCentury BCIQTAS2R9
ClinGenTAS2R9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50835
Chemical/Pharm GKB GenePA37927
Clinical trialTAS2R9
Miscellaneous
canSAR (ICR)TAS2R9 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R9
EVEXTAS2R9
GoPubMedTAS2R9
iHOPTAS2R9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:31:46 CET 2017

Home   Genes   Leukemias   Solid Tumors   9Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.