Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TASOR (transcription activation suppressor)

Identity

Alias (NCBI)C3orf63
FAM208A
RAP140
TASOR1
se89-1
HGNC (Hugo) TASOR
HGNC Alias symbse89-1
RAP140
KIAA1105
HGNC Previous nameC3orf63
HGNC Previous namechromosome 3 open reading frame 63
 family with sequence similarity 208, member A
LocusID (NCBI) 23272
Atlas_Id 63124
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 56620132 and ends at 56664046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TASOR   30314
Cards
Entrez_Gene (NCBI)TASOR    transcription activation suppressor
AliasesC3orf63; FAM208A; RAP140; TASOR1; 
se89-1
GeneCards (Weizmann)TASOR
Ensembl hg19 (Hinxton)ENSG00000163946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163946 [Gene_View]  ENSG00000163946 [Sequence]  chr3:56620132-56664046 [Contig_View]  TASOR [Vega]
ICGC DataPortalENSG00000163946
TCGA cBioPortalTASOR
AceView (NCBI)TASOR
Genatlas (Paris)TASOR
SOURCE (Princeton)TASOR
Genetics Home Reference (NIH)TASOR
Genomic and cartography
GoldenPath hg38 (UCSC)TASOR  -     chr3:56620132-56664046 -  3p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TASOR  -     3p14.3   [Description]    (hg19-Feb_2009)
GoldenPathTASOR - 3p14.3 [CytoView hg19]  TASOR - 3p14.3 [CytoView hg38]
ImmunoBaseENSG00000163946
Genome Data Viewer NCBITASOR [Mapview hg19]  
OMIM616493   
Gene and transcription
Genbank (Entrez)AB029028 AF180425 AF273053 AK094486 AK307599
RefSeq transcript (Entrez)NM_001112736 NM_001363940 NM_001365635 NM_001365636 NM_001365637 NM_001365638 NM_015224
Consensus coding sequences : CCDS (NCBI)TASOR
Gene ExpressionTASOR [ NCBI-GEO ]   TASOR [ EBI - ARRAY_EXPRESS ]   TASOR [ SEEK ]   TASOR [ MEM ]
Gene Expression Viewer (FireBrowse)TASOR [ Firebrowse - Broad ]
GenevisibleExpression of TASOR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23272
GTEX Portal (Tissue expression)TASOR
Human Protein AtlasENSG00000163946-TASOR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK61
PhosPhoSitePlusQ9UK61
Domains : Interpro (EBI)DUF3715   
Domain families : Pfam (Sanger)DUF3715 (PF12509)   
Domain families : Pfam (NCBI)pfam12509   
Conserved Domain (NCBI)TASOR
PDB (RSDB)6SWG    6TL1   
PDB Europe6SWG    6TL1   
PDB (PDBSum)6SWG    6TL1   
PDB (IMB)6SWG    6TL1   
Structural Biology KnowledgeBase6SWG    6TL1   
SCOP (Structural Classification of Proteins)6SWG    6TL1   
CATH (Classification of proteins structures)6SWG    6TL1   
SuperfamilyQ9UK61
AlphaFold pdb e-kbQ9UK61   
Human Protein Atlas [tissue]ENSG00000163946-TASOR [tissue]
HPRD10183
Protein Interaction databases
DIP (DOE-UCLA)Q9UK61
IntAct (EBI)Q9UK61
BioGRIDTASOR
STRING (EMBL)TASOR
ZODIACTASOR
Ontologies - Pathways
QuickGOQ9UK61
Ontology : AmiGOheterochromatin  chromatin binding  RNA binding  protein binding  nucleoplasm  anterior/posterior axis specification, embryo  negative regulation of gene expression, epigenetic  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  mesodermal to mesenchymal transition involved in gastrulation  positive regulation of DNA methylation-dependent heterochromatin assembly  protein localization to heterochromatin  
Ontology : EGO-EBIheterochromatin  chromatin binding  RNA binding  protein binding  nucleoplasm  anterior/posterior axis specification, embryo  negative regulation of gene expression, epigenetic  negative regulation of single stranded viral RNA replication via double stranded DNA intermediate  mesodermal to mesenchymal transition involved in gastrulation  positive regulation of DNA methylation-dependent heterochromatin assembly  protein localization to heterochromatin  
NDEx NetworkTASOR
Atlas of Cancer Signalling NetworkTASOR
Wikipedia pathwaysTASOR
Orthology - Evolution
OrthoDB23272
GeneTree (enSembl)ENSG00000163946
Phylogenetic Trees/Animal Genes : TreeFamTASOR
Homologs : HomoloGeneTASOR
Homology/Alignments : Family Browser (UCSC)TASOR
Gene fusions - Rearrangements
Fusion : QuiverTASOR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTASOR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TASOR
dbVarTASOR
ClinVarTASOR
MonarchTASOR
1000_GenomesTASOR 
Exome Variant ServerTASOR
GNOMAD BrowserENSG00000163946
Varsome BrowserTASOR
ACMGTASOR variants
VarityQ9UK61
Genomic Variants (DGV)TASOR [DGVbeta]
DECIPHERTASOR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTASOR 
Mutations
ICGC Data PortalTASOR 
TCGA Data PortalTASOR 
Broad Tumor PortalTASOR
OASIS PortalTASOR [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTASOR
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTASOR
DgiDB (Drug Gene Interaction Database)TASOR
DoCM (Curated mutations)TASOR
CIViC (Clinical Interpretations of Variants in Cancer)TASOR
Cancer3DTASOR
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616493   
Orphanet
DisGeNETTASOR
MedgenTASOR
Genetic Testing Registry TASOR
NextProtQ9UK61 [Medical]
GENETestsTASOR
Target ValidationTASOR
Huge Navigator TASOR [HugePedia]
ClinGenTASOR
Clinical trials, drugs, therapy
MyCancerGenomeTASOR
Protein Interactions : CTDTASOR
Pharm GKB GenePA128395774
PharosQ9UK61
Clinical trialTASOR
Miscellaneous
canSAR (ICR)TASOR
HarmonizomeTASOR
DataMed IndexTASOR
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTASOR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:24:54 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.