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TASP1 (taspase 1)

Identity

Alias_namesC20orf13
chromosome 20 open reading frame 13
Alias_symbol (synonym)FLJ20212
dJ585I14.2
Other alias
HGNC (Hugo) TASP1
LocusID (NCBI) 55617
Atlas_Id 51633
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 13389389 and ends at 13638936 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MACROD2 (20p12.1) / TASP1 (20p12.1)PARP14 (3q21.1) / TASP1 (20p12.1)RRBP1 (20p12.1) / TASP1 (20p12.1)
TASP1 (20p12.1) / AZIN1 (8q22.3)TASP1 (20p12.1) / ESF1 (20p12.1)TASP1 (20p12.1) / HLCS (21q22.13)
TASP1 (20p12.1) / MACROD2 (20p12.1)TASP1 (20p12.1) / PLCB1 (20p12.3)TASP1 (20p12.1) / SEL1L2 (20p12.1)
TASP1 (20p12.1) / SLC24A3 (20p11.23)TASP1 (20p12.1) / TASP1 (20p12.1)ZNF18 (17p12) / TASP1 (20p12.1)
MACROD2 20p12.1 / TASP1 20p12.1PARP14 3q21.1 / TASP1 20p12.1RRBP1 20p12.1 / TASP1 20p12.1
TASP1 20p12.1 / ESF1 20p12.1TASP1 20p12.1 / HLCS 21q22.13TASP1 20p12.1 / MACROD2 20p12.1
TASP1 20p12.1 / SEL1L2 20p12.1TASP1 20p12.1 / SLC24A3 20p11.23ZNF18 17p12 / TASP1 20p12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TASP1   15859
Cards
Entrez_Gene (NCBI)TASP1  55617  taspase 1
AliasesC20orf13; dJ585I14.2
GeneCards (Weizmann)TASP1
Ensembl hg19 (Hinxton)ENSG00000089123 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089123 [Gene_View]  chr20:13389389-13638936 [Contig_View]  TASP1 [Vega]
ICGC DataPortalENSG00000089123
TCGA cBioPortalTASP1
AceView (NCBI)TASP1
Genatlas (Paris)TASP1
WikiGenes55617
SOURCE (Princeton)TASP1
Genetics Home Reference (NIH)TASP1
Genomic and cartography
GoldenPath hg38 (UCSC)TASP1  -     chr20:13389389-13638936 -  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TASP1  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblTASP1 - 20p12.1 [CytoView hg19]  TASP1 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBITASP1 [Mapview hg19]  TASP1 [Mapview hg38]
OMIM608270   
Gene and transcription
Genbank (Entrez)AK000219 AK025671 AK299940 AK304488 AK316311
RefSeq transcript (Entrez)NM_001323602 NM_001323603 NM_001323604 NM_017714
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TASP1
Cluster EST : UnigeneHs.348297 [ NCBI ]
CGAP (NCI)Hs.348297
Alternative Splicing GalleryENSG00000089123
Gene ExpressionTASP1 [ NCBI-GEO ]   TASP1 [ EBI - ARRAY_EXPRESS ]   TASP1 [ SEEK ]   TASP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TASP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55617
GTEX Portal (Tissue expression)TASP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6P5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6P5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6P5
Splice isoforms : SwissVarQ9H6P5
Catalytic activity : Enzyme3.4.25.- [ Enzyme-Expasy ]   3.4.25.-3.4.25.- [ IntEnz-EBI ]   3.4.25.- [ BRENDA ]   3.4.25.- [ KEGG ]   
PhosPhoSitePlusQ9H6P5
Domains : Interpro (EBI)Ntn_hydrolases_N    Peptidase_T2   
Domain families : Pfam (Sanger)Asparaginase_2 (PF01112)   
Domain families : Pfam (NCBI)pfam01112   
Conserved Domain (NCBI)TASP1
DMDM Disease mutations55617
Blocks (Seattle)TASP1
PDB (SRS)2A8I    2A8J    2A8L    2A8M   
PDB (PDBSum)2A8I    2A8J    2A8L    2A8M   
PDB (IMB)2A8I    2A8J    2A8L    2A8M   
PDB (RSDB)2A8I    2A8J    2A8L    2A8M   
Structural Biology KnowledgeBase2A8I    2A8J    2A8L    2A8M   
SCOP (Structural Classification of Proteins)2A8I    2A8J    2A8L    2A8M   
CATH (Classification of proteins structures)2A8I    2A8J    2A8L    2A8M   
SuperfamilyQ9H6P5
Human Protein AtlasENSG00000089123
Peptide AtlasQ9H6P5
HPRD07460
IPIIPI00302837   IPI00922920   IPI00921872   IPI00642142   IPI00515120   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6P5
IntAct (EBI)Q9H6P5
FunCoupENSG00000089123
BioGRIDTASP1
STRING (EMBL)TASP1
ZODIACTASP1
Ontologies - Pathways
QuickGOQ9H6P5
Ontology : AmiGOthreonine-type endopeptidase activity  proteolysis  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIthreonine-type endopeptidase activity  proteolysis  positive regulation of transcription, DNA-templated  
NDEx NetworkTASP1
Atlas of Cancer Signalling NetworkTASP1
Wikipedia pathwaysTASP1
Orthology - Evolution
OrthoDB55617
GeneTree (enSembl)ENSG00000089123
Phylogenetic Trees/Animal Genes : TreeFamTASP1
HOVERGENQ9H6P5
HOGENOMQ9H6P5
Homologs : HomoloGeneTASP1
Homology/Alignments : Family Browser (UCSC)TASP1
Gene fusions - Rearrangements
Fusion : MitelmanMACROD2/TASP1 [20p12.1/20p12.1]  [t(20;20)(p12;p12)]  
Fusion : MitelmanPARP14/TASP1 [3q21.1/20p12.1]  [t(3;20)(q21;p12)]  
Fusion : MitelmanRRBP1/TASP1 [20p12.1/20p12.1]  [t(20;20)(p12;p12)]  
Fusion : MitelmanTASP1/ESF1 [20p12.1/20p12.1]  [t(20;20)(p12;p12)]  
Fusion : MitelmanTASP1/HLCS [20p12.1/21q22.13]  [t(20;21)(p12;q22)]  
Fusion : MitelmanTASP1/MACROD2 [20p12.1/20p12.1]  [t(20;20)(p12;p12)]  
Fusion : MitelmanTASP1/SEL1L2 [20p12.1/20p12.1]  [t(20;20)(p12;p12)]  
Fusion : MitelmanTASP1/SLC24A3 [20p12.1/20p11.23]  [t(20;20)(p11;p12)]  
Fusion : MitelmanZNF18/TASP1 [17p12/20p12.1]  [t(17;20)(p12;p12)]  
Fusion: TCGAMACROD2 20p12.1 TASP1 20p12.1 LUAD
Fusion: TCGAPARP14 3q21.1 TASP1 20p12.1 LUAD
Fusion: TCGARRBP1 20p12.1 TASP1 20p12.1 LUAD
Fusion: TCGATASP1 20p12.1 ESF1 20p12.1 PRAD
Fusion: TCGATASP1 20p12.1 HLCS 21q22.13 BRCA
Fusion: TCGATASP1 20p12.1 MACROD2 20p12.1 PRAD
Fusion: TCGATASP1 20p12.1 SEL1L2 20p12.1 PRAD
Fusion: TCGATASP1 20p12.1 SLC24A3 20p11.23 LUAD
Fusion: TCGAZNF18 17p12 TASP1 20p12.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTASP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TASP1
dbVarTASP1
ClinVarTASP1
1000_GenomesTASP1 
Exome Variant ServerTASP1
ExAC (Exome Aggregation Consortium)TASP1 (select the gene name)
Genetic variants : HAPMAP55617
Genomic Variants (DGV)TASP1 [DGVbeta]
DECIPHERTASP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTASP1 
Mutations
ICGC Data PortalTASP1 
TCGA Data PortalTASP1 
Broad Tumor PortalTASP1
OASIS PortalTASP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTASP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTASP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TASP1
DgiDB (Drug Gene Interaction Database)TASP1
DoCM (Curated mutations)TASP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TASP1 (select a term)
intoGenTASP1
Cancer3DTASP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608270   
Orphanet
MedgenTASP1
Genetic Testing Registry TASP1
NextProtQ9H6P5 [Medical]
TSGene55617
GENETestsTASP1
Target ValidationTASP1
Huge Navigator TASP1 [HugePedia]
snp3D : Map Gene to Disease55617
BioCentury BCIQTASP1
ClinGenTASP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55617
Chemical/Pharm GKB GenePA25671
Clinical trialTASP1
Miscellaneous
canSAR (ICR)TASP1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTASP1
EVEXTASP1
GoPubMedTASP1
iHOPTASP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:34:12 CEST 2017

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