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TAT (tyrosine aminotransferase)

Identity

Other names-
HGNC (Hugo) TAT
LocusID (NCBI) 6898
Location 16q22.2
Location_base_pair Starts at 71600754 and ends at 71610998 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TAT   11573
Cards
Entrez_Gene (NCBI)TAT  6898  tyrosine aminotransferase
GeneCards (Weizmann)TAT
Ensembl (Hinxton) [Gene_View]  chr16:71600754-71610998 [Contig_View]  TAT [Vega]
AceView (NCBI)TAT
Genatlas (Paris)TAT
WikiGenes6898
SOURCE (Princeton)NM_000353
Genomic and cartography
GoldenPath (UCSC)TAT  -  16q22.2   chr16:71600754-71610998 -  16q22.2   [Description]    (hg19-Feb_2009)
EnsemblTAT - 16q22.2 [CytoView]
Mapping of homologs : NCBITAT [Mapview]
OMIM276600   613018   
Gene and transcription
Genbank (Entrez)AK313380 BC020707 BC022292 BC130534 HQ258233
RefSeq transcript (Entrez)NM_000353
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_008235 NT_010498 NW_001838325 NW_004929402
Consensus coding sequences : CCDS (NCBI)TAT
Cluster EST : UnigeneHs.161640 [ NCBI ]
CGAP (NCI)Hs.161640
Alternative Splicing : Fast-db (Paris)GSHG0011962
Gene ExpressionTAT [ NCBI-GEO ]     TAT [ SEEK ]   TAT [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17735 (Uniprot)
NextProtP17735  [Medical]
With graphics : InterProP17735
Splice isoforms : SwissVarP17735 (Swissvar)
Catalytic activity : Enzyme2.6.1.5 [ Enzyme-Expasy ]   2.6.1.52.6.1.5 [ IntEnz-EBI ]   2.6.1.5 [ BRENDA ]   2.6.1.5 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)AA_TRANSFER_CLASS_1 (PS00105)   
Domains : Interpro (EBI)Aminotransferase_I/II    NHTrfase_class1_PyrdxlP-BS    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2    Tyr_aminoTrfase_ubiquitination    TyrNic_aminoTrfase    Tyrosine_aminoTrfase    Tyrosine_transaminase   
Related proteins : CluSTrP17735
Domain families : Pfam (Sanger)Aminotran_1_2 (PF00155)    TAT_ubiq (PF07706)   
Domain families : Pfam (NCBI)pfam00155    pfam07706   
DMDM Disease mutations6898
Blocks (Seattle)P17735
PDB (SRS)3DYD   
PDB (PDBSum)3DYD   
PDB (IMB)3DYD   
PDB (RSDB)3DYD   
Peptide AtlasP17735
HPRD11776
IPIIPI00016764   IPI00383039   
Protein Interaction databases
DIP (DOE-UCLA)P17735
IntAct (EBI)P17735
BioGRIDTAT
InParanoidP17735
Interologous Interaction database P17735
IntegromeDBTAT
STRING (EMBL)TAT
Ontologies - Pathways
Ontology : AmiGOL-tyrosine:2-oxoglutarate aminotransferase activity  L-tyrosine:2-oxoglutarate aminotransferase activity  L-tyrosine:2-oxoglutarate aminotransferase activity  cellular_component  mitochondrion  cytosol  2-oxoglutarate metabolic process  glutamate metabolic process  L-phenylalanine catabolic process  L-phenylalanine catabolic process  tyrosine catabolic process  response to oxidative stress  biosynthetic process  amino acid binding  pyridoxal phosphate binding  cellular nitrogen compound metabolic process  small molecule metabolic process  response to mercury ion  response to glucocorticoid  L-phenylalanine:2-oxoglutarate aminotransferase activity  
Ontology : EGO-EBIL-tyrosine:2-oxoglutarate aminotransferase activity  L-tyrosine:2-oxoglutarate aminotransferase activity  L-tyrosine:2-oxoglutarate aminotransferase activity  cellular_component  mitochondrion  cytosol  2-oxoglutarate metabolic process  glutamate metabolic process  L-phenylalanine catabolic process  L-phenylalanine catabolic process  tyrosine catabolic process  response to oxidative stress  biosynthetic process  amino acid binding  pyridoxal phosphate binding  cellular nitrogen compound metabolic process  small molecule metabolic process  response to mercury ion  response to glucocorticoid  L-phenylalanine:2-oxoglutarate aminotransferase activity  
Pathways : KEGGUbiquinone and other terpenoid-quinone biosynthesis    Cysteine and methionine metabolism    Tyrosine metabolism    Phenylalanine metabolism    Phenylalanine, tyrosine and tryptophan biosynthesis   
Protein Interaction DatabaseTAT
Wikipedia pathwaysTAT
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TAT
SNP (GeneSNP Utah)TAT
SNP : HGBaseTAT
Genetic variants : HAPMAPTAT
1000_GenomesTAT 
CONAN: Copy Number AnalysisTAT 
Somatic Mutations in Cancer : COSMICTAT 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Mutations and Diseases : HGMDTAT
OMIM276600    613018   
MedgenTAT
GENETestsTAT
Disease Genetic AssociationTAT
Huge Navigator TAT [HugePedia]  TAT [HugeCancerGEM]
Genomic VariantsTAT  TAT [DGVbeta]
Exome VariantTAT
dbVarTAT
ClinVarTAT
snp3D : Map Gene to Disease6898
General knowledge
Homologs : HomoloGeneTAT
Homology/Alignments : Family Browser (UCSC)TAT
Phylogenetic Trees/Animal Genes : TreeFamTAT
Chemical/Protein Interactions : CTD6898
Chemical/Pharm GKB GenePA36338
Clinical trialTAT
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineTAT
iHOPTAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:20:30 CEST 2014

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