Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TATDN1 (TatD DNase domain containing 1)

Identity

Alias (NCBI)CDA11
HGNC (Hugo) TATDN1
HGNC Alias symbCDA11
LocusID (NCBI) 83940
Atlas_Id 54687
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 124488499 and ends at 124539085 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TATDN1 (8q24.13) / DEPTOR (8q24.12)TATDN1 (8q24.13) / GSDMB (17q12)TATDN1 (8q24.13) / MTSS1 (8q24.13)
TATDN1 (8q24.13) / OC90 (8q24.22)TATDN1 8q24.13 / OC90 8q24.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TATDN1   24220
Cards
Entrez_Gene (NCBI)TATDN1    TatD DNase domain containing 1
AliasesCDA11
GeneCards (Weizmann)TATDN1
Ensembl hg19 (Hinxton)ENSG00000147687 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147687 [Gene_View]  ENSG00000147687 [Sequence]  chr8:124488499-124539085 [Contig_View]  TATDN1 [Vega]
ICGC DataPortalENSG00000147687
TCGA cBioPortalTATDN1
AceView (NCBI)TATDN1
Genatlas (Paris)TATDN1
SOURCE (Princeton)TATDN1
Genetics Home Reference (NIH)TATDN1
Genomic and cartography
GoldenPath hg38 (UCSC)TATDN1  -     chr8:124488499-124539085 -  8q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TATDN1  -     8q24.13   [Description]    (hg19-Feb_2009)
GoldenPathTATDN1 - 8q24.13 [CytoView hg19]  TATDN1 - 8q24.13 [CytoView hg38]
ImmunoBaseENSG00000147687
Genome Data Viewer NCBITATDN1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF212250 AK094861 AK125270 AK312204 AV729364
RefSeq transcript (Entrez)NM_001146160 NM_001317889 NM_001317890 NM_001317891 NM_032026
Consensus coding sequences : CCDS (NCBI)TATDN1
Gene ExpressionTATDN1 [ NCBI-GEO ]   TATDN1 [ EBI - ARRAY_EXPRESS ]   TATDN1 [ SEEK ]   TATDN1 [ MEM ]
Gene Expression Viewer (FireBrowse)TATDN1 [ Firebrowse - Broad ]
GenevisibleExpression of TATDN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83940
GTEX Portal (Tissue expression)TATDN1
Human Protein AtlasENSG00000147687-TATDN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1N9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1N9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1N9
Catalytic activity : Enzyme3.1.21.- [ Enzyme-Expasy ]   3.1.21.-3.1.21.- [ IntEnz-EBI ]   3.1.21.- [ BRENDA ]   3.1.21.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ6P1N9
Domaine pattern : Prosite (Expaxy)TATD_3 (PS01091)   
Domains : Interpro (EBI)DNase_TatD-rel_CS    Metal_Hydrolase    TatD_family   
Domain families : Pfam (Sanger)TatD_DNase (PF01026)   
Domain families : Pfam (NCBI)pfam01026   
Conserved Domain (NCBI)TATDN1
PDB (RSDB)2XIO   
PDB Europe2XIO   
PDB (PDBSum)2XIO   
PDB (IMB)2XIO   
Structural Biology KnowledgeBase2XIO   
SCOP (Structural Classification of Proteins)2XIO   
CATH (Classification of proteins structures)2XIO   
SuperfamilyQ6P1N9
AlphaFold pdb e-kbQ6P1N9   
Human Protein Atlas [tissue]ENSG00000147687-TATDN1 [tissue]
HPRD11621
Protein Interaction databases
DIP (DOE-UCLA)Q6P1N9
IntAct (EBI)Q6P1N9
BioGRIDTATDN1
STRING (EMBL)TATDN1
ZODIACTATDN1
Ontologies - Pathways
QuickGOQ6P1N9
Ontology : AmiGOprotein binding  nucleoplasm  DNA metabolic process  3'-5'-exodeoxyribonuclease activity  endodeoxyribonuclease activity, producing 5'-phosphomonoesters  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIprotein binding  nucleoplasm  DNA metabolic process  3'-5'-exodeoxyribonuclease activity  endodeoxyribonuclease activity, producing 5'-phosphomonoesters  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkTATDN1
Atlas of Cancer Signalling NetworkTATDN1
Wikipedia pathwaysTATDN1
Orthology - Evolution
OrthoDB83940
GeneTree (enSembl)ENSG00000147687
Phylogenetic Trees/Animal Genes : TreeFamTATDN1
Homologs : HomoloGeneTATDN1
Homology/Alignments : Family Browser (UCSC)TATDN1
Gene fusions - Rearrangements
Fusion : MitelmanTATDN1/GSDMB [8q24.13/17q12]  
Fusion : MitelmanTATDN1/OC90 [8q24.13/8q24.22]  
Fusion : QuiverTATDN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTATDN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TATDN1
dbVarTATDN1
ClinVarTATDN1
MonarchTATDN1
1000_GenomesTATDN1 
Exome Variant ServerTATDN1
GNOMAD BrowserENSG00000147687
Varsome BrowserTATDN1
ACMGTATDN1 variants
VarityQ6P1N9
Genomic Variants (DGV)TATDN1 [DGVbeta]
DECIPHERTATDN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTATDN1 
Mutations
ICGC Data PortalTATDN1 
TCGA Data PortalTATDN1 
Broad Tumor PortalTATDN1
OASIS PortalTATDN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTATDN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTATDN1
Mutations and Diseases : HGMDTATDN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTATDN1
DgiDB (Drug Gene Interaction Database)TATDN1
DoCM (Curated mutations)TATDN1
CIViC (Clinical Interpretations of Variants in Cancer)TATDN1
Cancer3DTATDN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTATDN1
MedgenTATDN1
Genetic Testing Registry TATDN1
NextProtQ6P1N9 [Medical]
GENETestsTATDN1
Target ValidationTATDN1
Huge Navigator TATDN1 [HugePedia]
ClinGenTATDN1
Clinical trials, drugs, therapy
MyCancerGenomeTATDN1
Protein Interactions : CTDTATDN1
Pharm GKB GenePA134971804
PharosQ6P1N9
Clinical trialTATDN1
Miscellaneous
canSAR (ICR)TATDN1
HarmonizomeTATDN1
DataMed IndexTATDN1
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTATDN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:18 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.