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TATDN2 (TatD DNase domain containing 2)

Identity

Alias_symbol (synonym)KIAA0218
Other alias-
HGNC (Hugo) TATDN2
LocusID (NCBI) 9797
Atlas_Id 74509
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 10290177 and ends at 10322906 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CACNA1G (17q21.33) / TATDN2 (3p25.3)TATDN2 (3p25.3) / SETD5 (3p25.3)TATDN2 (3p25.3) / TATDN2 (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TATDN2   28988
Cards
Entrez_Gene (NCBI)TATDN2  9797  TatD DNase domain containing 2
Aliases
GeneCards (Weizmann)TATDN2
Ensembl hg19 (Hinxton)ENSG00000157014 [Gene_View]  chr3:10290177-10322906 [Contig_View]  TATDN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157014 [Gene_View]  chr3:10290177-10322906 [Contig_View]  TATDN2 [Vega]
ICGC DataPortalENSG00000157014
TCGA cBioPortalTATDN2
AceView (NCBI)TATDN2
Genatlas (Paris)TATDN2
WikiGenes9797
SOURCE (Princeton)TATDN2
Genetics Home Reference (NIH)TATDN2
Genomic and cartography
GoldenPath hg19 (UCSC)TATDN2  -     chr3:10290177-10322906 +  3p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TATDN2  -     3p25.3   [Description]    (hg38-Dec_2013)
EnsemblTATDN2 - 3p25.3 [CytoView hg19]  TATDN2 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBITATDN2 [Mapview hg19]  TATDN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289794 AK311203 AW274827 BC090935 BC101770
RefSeq transcript (Entrez)NM_014760
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)TATDN2
Cluster EST : UnigeneHs.475401 [ NCBI ]
CGAP (NCI)Hs.475401
Alternative Splicing GalleryENSG00000157014
Gene ExpressionTATDN2 [ NCBI-GEO ]   TATDN2 [ EBI - ARRAY_EXPRESS ]   TATDN2 [ SEEK ]   TATDN2 [ MEM ]
Gene Expression Viewer (FireBrowse)TATDN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9797
GTEX Portal (Tissue expression)TATDN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93075   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93075  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93075
Splice isoforms : SwissVarQ93075
PhosPhoSitePlusQ93075
Domaine pattern : Prosite (Expaxy)TATD_1 (PS01137)    TATD_2 (PS01090)    TATD_3 (PS01091)   
Domains : Interpro (EBI)DNase_TatD-rel_CS    TatD_family   
Domain families : Pfam (Sanger)TatD_DNase (PF01026)   
Domain families : Pfam (NCBI)pfam01026   
Conserved Domain (NCBI)TATDN2
DMDM Disease mutations9797
Blocks (Seattle)TATDN2
SuperfamilyQ93075
Human Protein AtlasENSG00000157014
Peptide AtlasQ93075
HPRD18712
IPIIPI00004069   IPI00926511   IPI00926764   IPI00926937   
Protein Interaction databases
DIP (DOE-UCLA)Q93075
IntAct (EBI)Q93075
FunCoupENSG00000157014
BioGRIDTATDN2
STRING (EMBL)TATDN2
ZODIACTATDN2
Ontologies - Pathways
QuickGOQ93075
Ontology : AmiGOdeoxyribonuclease activity  nucleoplasm  DNA catabolic process  endodeoxyribonuclease activity, producing 5'-phosphomonoesters  endoplasmic reticulum unfolded protein response  IRE1-mediated unfolded protein response  intracellular organelle  cellular protein metabolic process  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIdeoxyribonuclease activity  nucleoplasm  DNA catabolic process  endodeoxyribonuclease activity, producing 5'-phosphomonoesters  endoplasmic reticulum unfolded protein response  IRE1-mediated unfolded protein response  intracellular organelle  cellular protein metabolic process  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkTATDN2
Atlas of Cancer Signalling NetworkTATDN2
Wikipedia pathwaysTATDN2
Orthology - Evolution
OrthoDB9797
GeneTree (enSembl)ENSG00000157014
Phylogenetic Trees/Animal Genes : TreeFamTATDN2
HOVERGENQ93075
HOGENOMQ93075
Homologs : HomoloGeneTATDN2
Homology/Alignments : Family Browser (UCSC)TATDN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTATDN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TATDN2
dbVarTATDN2
ClinVarTATDN2
1000_GenomesTATDN2 
Exome Variant ServerTATDN2
ExAC (Exome Aggregation Consortium)TATDN2 (select the gene name)
Genetic variants : HAPMAP9797
Genomic Variants (DGV)TATDN2 [DGVbeta]
DECIPHER (Syndromes)3:10290177-10322906  ENSG00000157014
CONAN: Copy Number AnalysisTATDN2 
Mutations
ICGC Data PortalTATDN2 
TCGA Data PortalTATDN2 
Broad Tumor PortalTATDN2
OASIS PortalTATDN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTATDN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTATDN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TATDN2
DgiDB (Drug Gene Interaction Database)TATDN2
DoCM (Curated mutations)TATDN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TATDN2 (select a term)
intoGenTATDN2
Cancer3DTATDN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTATDN2
Genetic Testing Registry TATDN2
NextProtQ93075 [Medical]
TSGene9797
GENETestsTATDN2
Huge Navigator TATDN2 [HugePedia]
snp3D : Map Gene to Disease9797
BioCentury BCIQTATDN2
ClinGenTATDN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9797
Chemical/Pharm GKB GenePA134959721
Clinical trialTATDN2
Miscellaneous
canSAR (ICR)TATDN2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTATDN2
EVEXTATDN2
GoPubMedTATDN2
iHOPTATDN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:30 CET 2017

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