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TATDN2 (TatD DNase domain containing 2)

Identity

Alias (NCBI)-
HGNC (Hugo) TATDN2
HGNC Alias symbKIAA0218
LocusID (NCBI) 9797
Atlas_Id 74509
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 10248459 and ends at 10281218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNA1G (17q21.33) / TATDN2 (3p25.3)TATDN2 (3p25.3) / SETD5 (3p25.3)TATDN2 (3p25.3) / TATDN2 (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TATDN2   28988
Cards
Entrez_Gene (NCBI)TATDN2    TatD DNase domain containing 2
Aliases
GeneCards (Weizmann)TATDN2
Ensembl hg19 (Hinxton)ENSG00000157014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157014 [Gene_View]  ENSG00000157014 [Sequence]  chr3:10248459-10281218 [Contig_View]  TATDN2 [Vega]
ICGC DataPortalENSG00000157014
TCGA cBioPortalTATDN2
AceView (NCBI)TATDN2
Genatlas (Paris)TATDN2
SOURCE (Princeton)TATDN2
Genetics Home Reference (NIH)TATDN2
Genomic and cartography
GoldenPath hg38 (UCSC)TATDN2  -     chr3:10248459-10281218 +  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TATDN2  -     3p25.3   [Description]    (hg19-Feb_2009)
GoldenPathTATDN2 - 3p25.3 [CytoView hg19]  TATDN2 - 3p25.3 [CytoView hg38]
ImmunoBaseENSG00000157014
Genome Data Viewer NCBITATDN2 [Mapview hg19]  
OMIM619330   
Gene and transcription
Genbank (Entrez)AK289794 AK311203 AW274827 BC090935 BC101770
RefSeq transcript (Entrez)NM_014760
Consensus coding sequences : CCDS (NCBI)TATDN2
Gene ExpressionTATDN2 [ NCBI-GEO ]   TATDN2 [ EBI - ARRAY_EXPRESS ]   TATDN2 [ SEEK ]   TATDN2 [ MEM ]
Gene Expression Viewer (FireBrowse)TATDN2 [ Firebrowse - Broad ]
GenevisibleExpression of TATDN2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9797
GTEX Portal (Tissue expression)TATDN2
Human Protein AtlasENSG00000157014-TATDN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93075   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93075  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93075
PhosPhoSitePlusQ93075
Domaine pattern : Prosite (Expaxy)TATD_1 (PS01137)    TATD_2 (PS01090)    TATD_3 (PS01091)   
Domains : Interpro (EBI)DNase_TatD-rel_CS    Metal_Hydrolase    TatD_family   
Domain families : Pfam (Sanger)TatD_DNase (PF01026)   
Domain families : Pfam (NCBI)pfam01026   
Conserved Domain (NCBI)TATDN2
SuperfamilyQ93075
AlphaFold pdb e-kbQ93075   
Human Protein Atlas [tissue]ENSG00000157014-TATDN2 [tissue]
HPRD18712
Protein Interaction databases
DIP (DOE-UCLA)Q93075
IntAct (EBI)Q93075
BioGRIDTATDN2
STRING (EMBL)TATDN2
ZODIACTATDN2
Ontologies - Pathways
QuickGOQ93075
Ontology : AmiGOnucleoplasm  DNA metabolic process  endodeoxyribonuclease activity, producing 5'-phosphomonoesters  IRE1-mediated unfolded protein response  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInucleoplasm  DNA metabolic process  endodeoxyribonuclease activity, producing 5'-phosphomonoesters  IRE1-mediated unfolded protein response  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkTATDN2
Atlas of Cancer Signalling NetworkTATDN2
Wikipedia pathwaysTATDN2
Orthology - Evolution
OrthoDB9797
GeneTree (enSembl)ENSG00000157014
Phylogenetic Trees/Animal Genes : TreeFamTATDN2
Homologs : HomoloGeneTATDN2
Homology/Alignments : Family Browser (UCSC)TATDN2
Gene fusions - Rearrangements
Fusion : QuiverTATDN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTATDN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TATDN2
dbVarTATDN2
ClinVarTATDN2
MonarchTATDN2
1000_GenomesTATDN2 
Exome Variant ServerTATDN2
GNOMAD BrowserENSG00000157014
Varsome BrowserTATDN2
ACMGTATDN2 variants
VarityQ93075
Genomic Variants (DGV)TATDN2 [DGVbeta]
DECIPHERTATDN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTATDN2 
Mutations
ICGC Data PortalTATDN2 
TCGA Data PortalTATDN2 
Broad Tumor PortalTATDN2
OASIS PortalTATDN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTATDN2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTATDN2
Mutations and Diseases : HGMDTATDN2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTATDN2
DgiDB (Drug Gene Interaction Database)TATDN2
DoCM (Curated mutations)TATDN2
CIViC (Clinical Interpretations of Variants in Cancer)TATDN2
Cancer3DTATDN2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619330   
Orphanet
DisGeNETTATDN2
MedgenTATDN2
Genetic Testing Registry TATDN2
NextProtQ93075 [Medical]
GENETestsTATDN2
Target ValidationTATDN2
Huge Navigator TATDN2 [HugePedia]
ClinGenTATDN2
Clinical trials, drugs, therapy
MyCancerGenomeTATDN2
Protein Interactions : CTDTATDN2
Pharm GKB GenePA134959721
PharosQ93075
Clinical trialTATDN2
Miscellaneous
canSAR (ICR)TATDN2
HarmonizomeTATDN2
DataMed IndexTATDN2
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTATDN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:55 CEST 2021

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