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TATDN3 (TatD DNase domain containing 3)

Identity

Other alias-
HGNC (Hugo) TATDN3
LocusID (NCBI) 128387
Atlas_Id 74510
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212791828 and ends at 212816825 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TATDN3 (1q32.3) / LARP4 (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TATDN3   27010
Cards
Entrez_Gene (NCBI)TATDN3  128387  TatD DNase domain containing 3
Aliases
GeneCards (Weizmann)TATDN3
Ensembl hg19 (Hinxton)ENSG00000203705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203705 [Gene_View]  chr1:212791828-212816825 [Contig_View]  TATDN3 [Vega]
ICGC DataPortalENSG00000203705
TCGA cBioPortalTATDN3
AceView (NCBI)TATDN3
Genatlas (Paris)TATDN3
WikiGenes128387
SOURCE (Princeton)TATDN3
Genetics Home Reference (NIH)TATDN3
Genomic and cartography
GoldenPath hg38 (UCSC)TATDN3  -     chr1:212791828-212816825 +  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TATDN3  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblTATDN3 - 1q32.3 [CytoView hg19]  TATDN3 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBITATDN3 [Mapview hg19]  TATDN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI990055 AK293129 AK295335 AK304557 AL832248
RefSeq transcript (Entrez)NM_001042552 NM_001042553 NM_001146169 NM_001146170 NM_001146171
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TATDN3
Cluster EST : UnigeneHs.530538 [ NCBI ]
CGAP (NCI)Hs.530538
Alternative Splicing GalleryENSG00000203705
Gene ExpressionTATDN3 [ NCBI-GEO ]   TATDN3 [ EBI - ARRAY_EXPRESS ]   TATDN3 [ SEEK ]   TATDN3 [ MEM ]
Gene Expression Viewer (FireBrowse)TATDN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128387
GTEX Portal (Tissue expression)TATDN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17R31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17R31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17R31
Splice isoforms : SwissVarQ17R31
PhosPhoSitePlusQ17R31
Domains : Interpro (EBI)Metal_Hydrolase    TatD_family   
Domain families : Pfam (Sanger)TatD_DNase (PF01026)   
Domain families : Pfam (NCBI)pfam01026   
Conserved Domain (NCBI)TATDN3
DMDM Disease mutations128387
Blocks (Seattle)TATDN3
PDB (SRS)2Y1H   
PDB (PDBSum)2Y1H   
PDB (IMB)2Y1H   
PDB (RSDB)2Y1H   
Structural Biology KnowledgeBase2Y1H   
SCOP (Structural Classification of Proteins)2Y1H   
CATH (Classification of proteins structures)2Y1H   
SuperfamilyQ17R31
Human Protein AtlasENSG00000203705
Peptide AtlasQ17R31
IPIIPI00402083   IPI00647574   IPI00924716   IPI00981801   IPI00922735   IPI00926376   IPI00985432   IPI00981393   IPI00978349   IPI00979457   IPI00982530   IPI00983740   
Protein Interaction databases
DIP (DOE-UCLA)Q17R31
IntAct (EBI)Q17R31
FunCoupENSG00000203705
BioGRIDTATDN3
STRING (EMBL)TATDN3
ZODIACTATDN3
Ontologies - Pathways
QuickGOQ17R31
Ontology : AmiGOnuclease activity  nucleus  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInuclease activity  nucleus  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkTATDN3
Atlas of Cancer Signalling NetworkTATDN3
Wikipedia pathwaysTATDN3
Orthology - Evolution
OrthoDB128387
GeneTree (enSembl)ENSG00000203705
Phylogenetic Trees/Animal Genes : TreeFamTATDN3
HOVERGENQ17R31
HOGENOMQ17R31
Homologs : HomoloGeneTATDN3
Homology/Alignments : Family Browser (UCSC)TATDN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTATDN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TATDN3
dbVarTATDN3
ClinVarTATDN3
1000_GenomesTATDN3 
Exome Variant ServerTATDN3
ExAC (Exome Aggregation Consortium)TATDN3 (select the gene name)
Genetic variants : HAPMAP128387
Genomic Variants (DGV)TATDN3 [DGVbeta]
DECIPHERTATDN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTATDN3 
Mutations
ICGC Data PortalTATDN3 
TCGA Data PortalTATDN3 
Broad Tumor PortalTATDN3
OASIS PortalTATDN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTATDN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTATDN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TATDN3
DgiDB (Drug Gene Interaction Database)TATDN3
DoCM (Curated mutations)TATDN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TATDN3 (select a term)
intoGenTATDN3
Cancer3DTATDN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTATDN3
Genetic Testing Registry TATDN3
NextProtQ17R31 [Medical]
TSGene128387
GENETestsTATDN3
Target ValidationTATDN3
Huge Navigator TATDN3 [HugePedia]
snp3D : Map Gene to Disease128387
BioCentury BCIQTATDN3
ClinGenTATDN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128387
Chemical/Pharm GKB GenePA142670831
Clinical trialTATDN3
Miscellaneous
canSAR (ICR)TATDN3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTATDN3
EVEXTATDN3
GoPubMedTATDN3
iHOPTATDN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:41:13 CEST 2017

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