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TATDN3 (TatD DNase domain containing 3)

Identity

Alias (NCBI)-
HGNC (Hugo) TATDN3
LocusID (NCBI) 128387
Atlas_Id 74510
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212791828 and ends at 212816825 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TATDN3 (1q32.3) / LARP4 (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TATDN3   27010
Cards
Entrez_Gene (NCBI)TATDN3    TatD DNase domain containing 3
Aliases
GeneCards (Weizmann)TATDN3
Ensembl hg19 (Hinxton)ENSG00000203705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203705 [Gene_View]  ENSG00000203705 [Sequence]  chr1:212791828-212816825 [Contig_View]  TATDN3 [Vega]
ICGC DataPortalENSG00000203705
TCGA cBioPortalTATDN3
AceView (NCBI)TATDN3
Genatlas (Paris)TATDN3
SOURCE (Princeton)TATDN3
Genetics Home Reference (NIH)TATDN3
Genomic and cartography
GoldenPath hg38 (UCSC)TATDN3  -     chr1:212791828-212816825 +  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TATDN3  -     1q32.3   [Description]    (hg19-Feb_2009)
GoldenPathTATDN3 - 1q32.3 [CytoView hg19]  TATDN3 - 1q32.3 [CytoView hg38]
ImmunoBaseENSG00000203705
Genome Data Viewer NCBITATDN3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI990055 AK293129 AK295335 AK304557 AL832248
RefSeq transcript (Entrez)NM_001042552 NM_001042553 NM_001146169 NM_001146170 NM_001146171 NM_001363589 NM_001363590
Consensus coding sequences : CCDS (NCBI)TATDN3
Gene ExpressionTATDN3 [ NCBI-GEO ]   TATDN3 [ EBI - ARRAY_EXPRESS ]   TATDN3 [ SEEK ]   TATDN3 [ MEM ]
Gene Expression Viewer (FireBrowse)TATDN3 [ Firebrowse - Broad ]
GenevisibleExpression of TATDN3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128387
GTEX Portal (Tissue expression)TATDN3
Human Protein AtlasENSG00000203705-TATDN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17R31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17R31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17R31
PhosPhoSitePlusQ17R31
Domains : Interpro (EBI)Metal_Hydrolase    TatD_family   
Domain families : Pfam (Sanger)TatD_DNase (PF01026)   
Domain families : Pfam (NCBI)pfam01026   
Conserved Domain (NCBI)TATDN3
PDB (RSDB)2Y1H   
PDB Europe2Y1H   
PDB (PDBSum)2Y1H   
PDB (IMB)2Y1H   
Structural Biology KnowledgeBase2Y1H   
SCOP (Structural Classification of Proteins)2Y1H   
CATH (Classification of proteins structures)2Y1H   
SuperfamilyQ17R31
AlphaFold pdb e-kbQ17R31   
Human Protein Atlas [tissue]ENSG00000203705-TATDN3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q17R31
IntAct (EBI)Q17R31
BioGRIDTATDN3
STRING (EMBL)TATDN3
ZODIACTATDN3
Ontologies - Pathways
QuickGOQ17R31
Ontology : AmiGOnuclease activity  nucleus  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInuclease activity  nucleus  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkTATDN3
Atlas of Cancer Signalling NetworkTATDN3
Wikipedia pathwaysTATDN3
Orthology - Evolution
OrthoDB128387
GeneTree (enSembl)ENSG00000203705
Phylogenetic Trees/Animal Genes : TreeFamTATDN3
Homologs : HomoloGeneTATDN3
Homology/Alignments : Family Browser (UCSC)TATDN3
Gene fusions - Rearrangements
Fusion : QuiverTATDN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTATDN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TATDN3
dbVarTATDN3
ClinVarTATDN3
MonarchTATDN3
1000_GenomesTATDN3 
Exome Variant ServerTATDN3
GNOMAD BrowserENSG00000203705
Varsome BrowserTATDN3
ACMGTATDN3 variants
VarityQ17R31
Genomic Variants (DGV)TATDN3 [DGVbeta]
DECIPHERTATDN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTATDN3 
Mutations
ICGC Data PortalTATDN3 
TCGA Data PortalTATDN3 
Broad Tumor PortalTATDN3
OASIS PortalTATDN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTATDN3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTATDN3
Mutations and Diseases : HGMDTATDN3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTATDN3
DgiDB (Drug Gene Interaction Database)TATDN3
DoCM (Curated mutations)TATDN3
CIViC (Clinical Interpretations of Variants in Cancer)TATDN3
Cancer3DTATDN3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTATDN3
MedgenTATDN3
Genetic Testing Registry TATDN3
NextProtQ17R31 [Medical]
GENETestsTATDN3
Target ValidationTATDN3
Huge Navigator TATDN3 [HugePedia]
ClinGenTATDN3
Clinical trials, drugs, therapy
MyCancerGenomeTATDN3
Protein Interactions : CTDTATDN3
Pharm GKB GenePA142670831
PharosQ17R31
Clinical trialTATDN3
Miscellaneous
canSAR (ICR)TATDN3
HarmonizomeTATDN3
DataMed IndexTATDN3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTATDN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:24:55 CEST 2021

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