Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA
Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

Donate (in US Dollars)


TAZ (tafazzin)

Identity

Other namesBTHS
CMD3A
EFE
EFE2
G4.5
LVNCX
Taz1
HGNC (Hugo) TAZ
LocusID (NCBI) 6901
Location Xq28
Location_base_pair Starts at 153639854 and ends at 153650063 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TAZ   11577
Cards
Entrez_Gene (NCBI)TAZ  6901  tafazzin
GeneCards (Weizmann)TAZ
Ensembl hg19 (Hinxton)ENSG00000102125 [Gene_View]  chrX:153639854-153650063 [Contig_View]  TAZ [Vega]
Ensembl hg38 (Hinxton)ENSG00000102125 [Gene_View]  chrX:153639854-153650063 [Contig_View]  TAZ [Vega]
ICGC DataPortalENSG00000102125
cBioPortalTAZ
AceView (NCBI)TAZ
Genatlas (Paris)TAZ
WikiGenes6901
SOURCE (Princeton)TAZ
Genomic and cartography
GoldenPath hg19 (UCSC)TAZ  -     chrX:153639854-153650063 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TAZ  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblTAZ - Xq28 [CytoView hg19]  TAZ - Xq28 [CytoView hg38]
Mapping of homologs : NCBITAZ [Mapview hg19]  TAZ [Mapview hg38]
OMIM300394   302060   
Gene and transcription
Genbank (Entrez)AK130900 AK291848 AL531401 AM392997 AM393205
RefSeq transcript (Entrez)NM_000116 NM_001303465 NM_181311 NM_181312 NM_181313 NM_181314
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_009634 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)TAZ
Cluster EST : UnigeneHs.409911 [ NCBI ]
CGAP (NCI)Hs.409911
Alternative Splicing : Fast-db (Paris)GSHG0031921
Alternative Splicing GalleryENSG00000102125
Gene ExpressionTAZ [ NCBI-GEO ]     TAZ [ SEEK ]   TAZ [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16635 (Uniprot)
NextProtQ16635  [Medical]
With graphics : InterProQ16635
Splice isoforms : SwissVarQ16635 (Swissvar)
Domains : Interpro (EBI)Plipid/glycerol_acylTrfase    Tafazzin   
Related proteins : CluSTrQ16635
Domain families : Pfam (Sanger)Acyltransferase (PF01553)   
Domain families : Pfam (NCBI)pfam01553   
Domain families : Smart (EMBL)PlsC (SM00563)  
DMDM Disease mutations6901
Blocks (Seattle)Q16635
Human Protein AtlasENSG00000102125
Peptide AtlasQ16635
HPRD02316
IPIIPI00470369   IPI00470561   IPI00470562   IPI00329790   IPI00470564   IPI00329274   IPI00329788   IPI00470566   IPI00446998   IPI01011514   IPI00747887   IPI00877779   IPI00880075   IPI00877602   IPI00926694   
Protein Interaction databases
DIP (DOE-UCLA)Q16635
IntAct (EBI)Q16635
FunCoupENSG00000102125
BioGRIDTAZ
IntegromeDBTAZ
STRING (EMBL)TAZ
Ontologies - Pathways
QuickGOQ16635
Ontology : AmiGOnucleus  mitochondrion  mitochondrion  mitochondrial inner membrane  cytosol  phospholipid metabolic process  muscle contraction  heart development  skeletal muscle tissue development  integral component of membrane  hemopoiesis  intrinsic component of membrane  mitochondrial membrane  cardiolipin biosynthetic process  mitochondrial respiratory chain complex I assembly  cardiolipin acyl-chain remodeling  cardiolipin acyl-chain remodeling  cristae formation  mitochondrial ATP synthesis coupled electron transport  small molecule metabolic process  glycerophospholipid biosynthetic process  1-acylglycerophosphocholine O-acyltransferase activity  cardiac muscle tissue development  cardiac muscle contraction  
Ontology : EGO-EBInucleus  mitochondrion  mitochondrion  mitochondrial inner membrane  cytosol  phospholipid metabolic process  muscle contraction  heart development  skeletal muscle tissue development  integral component of membrane  hemopoiesis  intrinsic component of membrane  mitochondrial membrane  cardiolipin biosynthetic process  mitochondrial respiratory chain complex I assembly  cardiolipin acyl-chain remodeling  cardiolipin acyl-chain remodeling  cristae formation  mitochondrial ATP synthesis coupled electron transport  small molecule metabolic process  glycerophospholipid biosynthetic process  1-acylglycerophosphocholine O-acyltransferase activity  cardiac muscle tissue development  cardiac muscle contraction  
Pathways : KEGGGlycerophospholipid metabolism   
Protein Interaction DatabaseTAZ
DoCM (Curated mutations)TAZ
Wikipedia pathwaysTAZ
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTAZ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAZ
dbVarTAZ
ClinVarTAZ
1000_GenomesTAZ 
Exome Variant ServerTAZ
SNP (GeneSNP Utah)TAZ
SNP : HGBaseTAZ
Genetic variants : HAPMAPTAZ
Genomic Variants (DGV)TAZ [DGVbeta]
Mutations
ICGC Data PortalENSG00000102125 
Somatic Mutations in Cancer : COSMICTAZ 
CONAN: Copy Number AnalysisTAZ 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM)
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:153639854-153650063
Mutations and Diseases : HGMDTAZ
OMIM300394    302060   
MedgenTAZ
NextProtQ16635 [Medical]
GENETestsTAZ
Disease Genetic AssociationTAZ
Huge Navigator TAZ [HugePedia]  TAZ [HugeCancerGEM]
snp3D : Map Gene to Disease6901
DGIdb (Drug Gene Interaction db)TAZ
General knowledge
Homologs : HomoloGeneTAZ
Homology/Alignments : Family Browser (UCSC)TAZ
Phylogenetic Trees/Animal Genes : TreeFamTAZ
Chemical/Protein Interactions : CTD6901
Chemical/Pharm GKB GenePA36341
Clinical trialTAZ
Cancer Resource (Charite)ENSG00000102125
Other databases
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
CoreMineTAZ
GoPubMedTAZ
iHOPTAZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:34:58 CET 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.