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TBATA (thymus, brain and testes associated)

Identity

Alias_namesC10orf27
chromosome 10 open reading frame 27
Alias_symbol (synonym)FLJ32820
spatial
Other alias
HGNC (Hugo) TBATA
LocusID (NCBI) 219793
Atlas_Id 74511
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 72530995 and ends at 72545157 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBATA   23511
Cards
Entrez_Gene (NCBI)TBATA  219793  thymus, brain and testes associated
AliasesC10orf27; spatial
GeneCards (Weizmann)TBATA
Ensembl hg19 (Hinxton)ENSG00000166220 [Gene_View]  chr10:72530995-72545157 [Contig_View]  TBATA [Vega]
Ensembl hg38 (Hinxton)ENSG00000166220 [Gene_View]  chr10:72530995-72545157 [Contig_View]  TBATA [Vega]
ICGC DataPortalENSG00000166220
TCGA cBioPortalTBATA
AceView (NCBI)TBATA
Genatlas (Paris)TBATA
WikiGenes219793
SOURCE (Princeton)TBATA
Genetics Home Reference (NIH)TBATA
Genomic and cartography
GoldenPath hg19 (UCSC)TBATA  -     chr10:72530995-72545157 -  10q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TBATA  -     10q22.1   [Description]    (hg38-Dec_2013)
EnsemblTBATA - 10q22.1 [CytoView hg19]  TBATA - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBITBATA [Mapview hg19]  TBATA [Mapview hg38]
OMIM612640   
Gene and transcription
Genbank (Entrez)AK057382 AK124147 AK303242 AK303344 AK303491
RefSeq transcript (Entrez)NM_152710
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)TBATA
Cluster EST : UnigeneHs.386698 [ NCBI ]
CGAP (NCI)Hs.386698
Alternative Splicing GalleryENSG00000166220
Gene ExpressionTBATA [ NCBI-GEO ]   TBATA [ EBI - ARRAY_EXPRESS ]   TBATA [ SEEK ]   TBATA [ MEM ]
Gene Expression Viewer (FireBrowse)TBATA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219793
GTEX Portal (Tissue expression)TBATA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M53
Splice isoforms : SwissVarQ96M53
PhosPhoSitePlusQ96M53
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TBATA
DMDM Disease mutations219793
Blocks (Seattle)TBATA
SuperfamilyQ96M53
Human Protein AtlasENSG00000166220
Peptide AtlasQ96M53
HPRD08500
IPIIPI00845363   IPI00922467   IPI00922502   IPI00065315   IPI00513783   
Protein Interaction databases
DIP (DOE-UCLA)Q96M53
IntAct (EBI)Q96M53
FunCoupENSG00000166220
BioGRIDTBATA
STRING (EMBL)TBATA
ZODIACTBATA
Ontologies - Pathways
QuickGOQ96M53
Ontology : AmiGOnucleus  cytosol  multicellular organismal development  spermatogenesis  cell differentiation  
Ontology : EGO-EBInucleus  cytosol  multicellular organismal development  spermatogenesis  cell differentiation  
NDEx NetworkTBATA
Atlas of Cancer Signalling NetworkTBATA
Wikipedia pathwaysTBATA
Orthology - Evolution
OrthoDB219793
GeneTree (enSembl)ENSG00000166220
Phylogenetic Trees/Animal Genes : TreeFamTBATA
HOVERGENQ96M53
HOGENOMQ96M53
Homologs : HomoloGeneTBATA
Homology/Alignments : Family Browser (UCSC)TBATA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBATA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBATA
dbVarTBATA
ClinVarTBATA
1000_GenomesTBATA 
Exome Variant ServerTBATA
ExAC (Exome Aggregation Consortium)TBATA (select the gene name)
Genetic variants : HAPMAP219793
Genomic Variants (DGV)TBATA [DGVbeta]
DECIPHER (Syndromes)10:72530995-72545157  ENSG00000166220
CONAN: Copy Number AnalysisTBATA 
Mutations
ICGC Data PortalTBATA 
TCGA Data PortalTBATA 
Broad Tumor PortalTBATA
OASIS PortalTBATA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBATA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBATA
BioMutasearch TBATA
DgiDB (Drug Gene Interaction Database)TBATA
DoCM (Curated mutations)TBATA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBATA (select a term)
intoGenTBATA
Cancer3DTBATA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612640   
Orphanet
MedgenTBATA
Genetic Testing Registry TBATA
NextProtQ96M53 [Medical]
TSGene219793
GENETestsTBATA
Huge Navigator TBATA [HugePedia]
snp3D : Map Gene to Disease219793
BioCentury BCIQTBATA
ClinGenTBATA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219793
Chemical/Pharm GKB GenePA134924486
Clinical trialTBATA
Miscellaneous
canSAR (ICR)TBATA (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBATA
EVEXTBATA
GoPubMedTBATA
iHOPTBATA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:30 CET 2017

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