Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TBATA (thymus, brain and testes associated)

Identity

Alias (NCBI)C10orf27
SPATIAL
HGNC (Hugo) TBATA
HGNC Alias symbFLJ32820
spatial
HGNC Previous nameC10orf27
HGNC Previous namechromosome 10 open reading frame 27
LocusID (NCBI) 219793
Atlas_Id 74511
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 70771238 and ends at 70785377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBATA   23511
Cards
Entrez_Gene (NCBI)TBATA    thymus, brain and testes associated
AliasesC10orf27; SPATIAL
GeneCards (Weizmann)TBATA
Ensembl hg19 (Hinxton)ENSG00000166220 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166220 [Gene_View]  ENSG00000166220 [Sequence]  chr10:70771238-70785377 [Contig_View]  TBATA [Vega]
ICGC DataPortalENSG00000166220
TCGA cBioPortalTBATA
AceView (NCBI)TBATA
Genatlas (Paris)TBATA
SOURCE (Princeton)TBATA
Genetics Home Reference (NIH)TBATA
Genomic and cartography
GoldenPath hg38 (UCSC)TBATA  -     chr10:70771238-70785377 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBATA  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTBATA - 10q22.1 [CytoView hg19]  TBATA - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000166220
Genome Data Viewer NCBITBATA [Mapview hg19]  
OMIM612640   
Gene and transcription
Genbank (Entrez)AK057382 AK124147 AK303242 AK303344 AK303491
RefSeq transcript (Entrez)NM_001318241 NM_001318242 NM_001318243 NM_152710
Consensus coding sequences : CCDS (NCBI)TBATA
Gene ExpressionTBATA [ NCBI-GEO ]   TBATA [ EBI - ARRAY_EXPRESS ]   TBATA [ SEEK ]   TBATA [ MEM ]
Gene Expression Viewer (FireBrowse)TBATA [ Firebrowse - Broad ]
GenevisibleExpression of TBATA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219793
GTEX Portal (Tissue expression)TBATA
Human Protein AtlasENSG00000166220-TBATA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M53
PhosPhoSitePlusQ96M53
Domains : Interpro (EBI)TBATA-like   
Domain families : Pfam (Sanger)SPATIAL (PF15256)   
Domain families : Pfam (NCBI)pfam15256   
Conserved Domain (NCBI)TBATA
SuperfamilyQ96M53
AlphaFold pdb e-kbQ96M53   
Human Protein Atlas [tissue]ENSG00000166220-TBATA [tissue]
HPRD08500
Protein Interaction databases
DIP (DOE-UCLA)Q96M53
IntAct (EBI)Q96M53
BioGRIDTBATA
STRING (EMBL)TBATA
ZODIACTBATA
Ontologies - Pathways
QuickGOQ96M53
Ontology : AmiGOprotein binding  cytosol  multicellular organism development  spermatogenesis  cell differentiation  ciliary basal body  
Ontology : EGO-EBIprotein binding  cytosol  multicellular organism development  spermatogenesis  cell differentiation  ciliary basal body  
NDEx NetworkTBATA
Atlas of Cancer Signalling NetworkTBATA
Wikipedia pathwaysTBATA
Orthology - Evolution
OrthoDB219793
GeneTree (enSembl)ENSG00000166220
Phylogenetic Trees/Animal Genes : TreeFamTBATA
Homologs : HomoloGeneTBATA
Homology/Alignments : Family Browser (UCSC)TBATA
Gene fusions - Rearrangements
Fusion : QuiverTBATA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBATA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBATA
dbVarTBATA
ClinVarTBATA
MonarchTBATA
1000_GenomesTBATA 
Exome Variant ServerTBATA
GNOMAD BrowserENSG00000166220
Varsome BrowserTBATA
ACMGTBATA variants
VarityQ96M53
Genomic Variants (DGV)TBATA [DGVbeta]
DECIPHERTBATA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBATA 
Mutations
ICGC Data PortalTBATA 
TCGA Data PortalTBATA 
Broad Tumor PortalTBATA
OASIS PortalTBATA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBATA  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBATA
Mutations and Diseases : HGMDTBATA
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBATA
DgiDB (Drug Gene Interaction Database)TBATA
DoCM (Curated mutations)TBATA
CIViC (Clinical Interpretations of Variants in Cancer)TBATA
Cancer3DTBATA
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612640   
Orphanet
DisGeNETTBATA
MedgenTBATA
Genetic Testing Registry TBATA
NextProtQ96M53 [Medical]
GENETestsTBATA
Target ValidationTBATA
Huge Navigator TBATA [HugePedia]
ClinGenTBATA
Clinical trials, drugs, therapy
MyCancerGenomeTBATA
Protein Interactions : CTDTBATA
Pharm GKB GenePA134924486
PharosQ96M53
Clinical trialTBATA
Miscellaneous
canSAR (ICR)TBATA
HarmonizomeTBATA
DataMed IndexTBATA
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBATA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:24:55 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.