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TBC1D10C (TBC1 domain family member 10C)

Identity

Alias_namesTBC1 domain family
Alias_symbol (synonym)FLJ00332
Carabin
EPI64C
Other aliasCARABIN
HGNC (Hugo) TBC1D10C
LocusID (NCBI) 374403
Atlas_Id 56225
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67403913 and ends at 67410090 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D10C   24702
Cards
Entrez_Gene (NCBI)TBC1D10C  374403  TBC1 domain family member 10C
AliasesCARABIN; EPI64C
GeneCards (Weizmann)TBC1D10C
Ensembl hg19 (Hinxton)ENSG00000175463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175463 [Gene_View]  chr11:67403913-67410090 [Contig_View]  TBC1D10C [Vega]
ICGC DataPortalENSG00000175463
TCGA cBioPortalTBC1D10C
AceView (NCBI)TBC1D10C
Genatlas (Paris)TBC1D10C
WikiGenes374403
SOURCE (Princeton)TBC1D10C
Genetics Home Reference (NIH)TBC1D10C
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D10C  -     chr11:67403913-67410090 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D10C  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblTBC1D10C - 11q13.2 [CytoView hg19]  TBC1D10C - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBITBC1D10C [Mapview hg19]  TBC1D10C [Mapview hg38]
OMIM610831   
Gene and transcription
Genbank (Entrez)AK122585 AK126131 BC022202 BC035630 BC036873
RefSeq transcript (Entrez)NM_001256508 NM_198517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D10C
Cluster EST : UnigeneHs.534648 [ NCBI ]
CGAP (NCI)Hs.534648
Alternative Splicing GalleryENSG00000175463
Gene ExpressionTBC1D10C [ NCBI-GEO ]   TBC1D10C [ EBI - ARRAY_EXPRESS ]   TBC1D10C [ SEEK ]   TBC1D10C [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D10C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374403
GTEX Portal (Tissue expression)TBC1D10C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV04
Splice isoforms : SwissVarQ8IV04
PhosPhoSitePlusQ8IV04
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D10C
DMDM Disease mutations374403
Blocks (Seattle)TBC1D10C
SuperfamilyQ8IV04
Human Protein AtlasENSG00000175463
Peptide AtlasQ8IV04
HPRD13330
IPIIPI00216811   IPI00384767   IPI00983985   IPI00983295   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV04
IntAct (EBI)Q8IV04
FunCoupENSG00000175463
BioGRIDTBC1D10C
STRING (EMBL)TBC1D10C
ZODIACTBC1D10C
Ontologies - Pathways
QuickGOQ8IV04
Ontology : AmiGOGTPase activator activity  protein binding  intracellular  cytosol  plasma membrane  plasma membrane  intracellular protein transport  endomembrane system  membrane  Rab GTPase binding  regulation of vesicle fusion  filopodium membrane  retrograde transport, endosome to Golgi  neutrophil degranulation  negative regulation of B cell activation  negative regulation of NFAT protein import into nucleus  negative regulation of ERK1 and ERK2 cascade  activation of GTPase activity  ficolin-1-rich granule membrane  regulation of cilium assembly  
Ontology : EGO-EBIGTPase activator activity  protein binding  intracellular  cytosol  plasma membrane  plasma membrane  intracellular protein transport  endomembrane system  membrane  Rab GTPase binding  regulation of vesicle fusion  filopodium membrane  retrograde transport, endosome to Golgi  neutrophil degranulation  negative regulation of B cell activation  negative regulation of NFAT protein import into nucleus  negative regulation of ERK1 and ERK2 cascade  activation of GTPase activity  ficolin-1-rich granule membrane  regulation of cilium assembly  
NDEx NetworkTBC1D10C
Atlas of Cancer Signalling NetworkTBC1D10C
Wikipedia pathwaysTBC1D10C
Orthology - Evolution
OrthoDB374403
GeneTree (enSembl)ENSG00000175463
Phylogenetic Trees/Animal Genes : TreeFamTBC1D10C
HOVERGENQ8IV04
HOGENOMQ8IV04
Homologs : HomoloGeneTBC1D10C
Homology/Alignments : Family Browser (UCSC)TBC1D10C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D10C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D10C
dbVarTBC1D10C
ClinVarTBC1D10C
1000_GenomesTBC1D10C 
Exome Variant ServerTBC1D10C
ExAC (Exome Aggregation Consortium)TBC1D10C (select the gene name)
Genetic variants : HAPMAP374403
Genomic Variants (DGV)TBC1D10C [DGVbeta]
DECIPHERTBC1D10C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D10C 
Mutations
ICGC Data PortalTBC1D10C 
TCGA Data PortalTBC1D10C 
Broad Tumor PortalTBC1D10C
OASIS PortalTBC1D10C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D10C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D10C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D10C
DgiDB (Drug Gene Interaction Database)TBC1D10C
DoCM (Curated mutations)TBC1D10C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D10C (select a term)
intoGenTBC1D10C
Cancer3DTBC1D10C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610831   
Orphanet
MedgenTBC1D10C
Genetic Testing Registry TBC1D10C
NextProtQ8IV04 [Medical]
TSGene374403
GENETestsTBC1D10C
Target ValidationTBC1D10C
Huge Navigator TBC1D10C [HugePedia]
snp3D : Map Gene to Disease374403
BioCentury BCIQTBC1D10C
ClinGenTBC1D10C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374403
Chemical/Pharm GKB GenePA142670836
Clinical trialTBC1D10C
Miscellaneous
canSAR (ICR)TBC1D10C (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D10C
EVEXTBC1D10C
GoPubMedTBC1D10C
iHOPTBC1D10C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:58:37 CEST 2017

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