Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TBC1D13 (TBC1 domain family member 13)

Identity

Alias_namesTBC1 domain family
Alias_symbol (synonym)FLJ10743
Other alias-
HGNC (Hugo) TBC1D13
LocusID (NCBI) 54662
Atlas_Id 56564
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128787207 and ends at 128810432 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DOLPP1 (9q34.11) / TBC1D13 (9q34.11)TBC1D13 (9q34.11) / TYK2 (19p13.2)ZER1 (9q34.11) / TBC1D13 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D13   25571
Cards
Entrez_Gene (NCBI)TBC1D13  54662  TBC1 domain family member 13
Aliases
GeneCards (Weizmann)TBC1D13
Ensembl hg19 (Hinxton)ENSG00000107021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107021 [Gene_View]  chr9:128787207-128810432 [Contig_View]  TBC1D13 [Vega]
ICGC DataPortalENSG00000107021
TCGA cBioPortalTBC1D13
AceView (NCBI)TBC1D13
Genatlas (Paris)TBC1D13
WikiGenes54662
SOURCE (Princeton)TBC1D13
Genetics Home Reference (NIH)TBC1D13
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D13  -     chr9:128787207-128810432 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D13  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblTBC1D13 - 9q34.11 [CytoView hg19]  TBC1D13 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBITBC1D13 [Mapview hg19]  TBC1D13 [Mapview hg38]
OMIM616218   
Gene and transcription
Genbank (Entrez)AB209565 AB449899 AK001605 AK027457 AK123828
RefSeq transcript (Entrez)NM_001286772 NM_018201
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D13
Cluster EST : UnigeneHs.3376 [ NCBI ]
CGAP (NCI)Hs.3376
Alternative Splicing GalleryENSG00000107021
Gene ExpressionTBC1D13 [ NCBI-GEO ]   TBC1D13 [ EBI - ARRAY_EXPRESS ]   TBC1D13 [ SEEK ]   TBC1D13 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54662
GTEX Portal (Tissue expression)TBC1D13
Human Protein AtlasENSG00000107021-TBC1D13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVG8
Splice isoforms : SwissVarQ9NVG8
PhosPhoSitePlusQ9NVG8
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D13
DMDM Disease mutations54662
Blocks (Seattle)TBC1D13
SuperfamilyQ9NVG8
Human Protein Atlas [tissue]ENSG00000107021-TBC1D13 [tissue]
Peptide AtlasQ9NVG8
HPRD18163
IPIIPI00647082   IPI00301216   IPI01014692   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVG8
IntAct (EBI)Q9NVG8
FunCoupENSG00000107021
BioGRIDTBC1D13
STRING (EMBL)TBC1D13
ZODIACTBC1D13
Ontologies - Pathways
QuickGOQ9NVG8
Ontology : AmiGOGTPase activator activity  intracellular  cytosol  intracellular protein transport  endomembrane system  membrane  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  regulation of cilium assembly  
Ontology : EGO-EBIGTPase activator activity  intracellular  cytosol  intracellular protein transport  endomembrane system  membrane  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  regulation of cilium assembly  
NDEx NetworkTBC1D13
Atlas of Cancer Signalling NetworkTBC1D13
Wikipedia pathwaysTBC1D13
Orthology - Evolution
OrthoDB54662
GeneTree (enSembl)ENSG00000107021
Phylogenetic Trees/Animal Genes : TreeFamTBC1D13
HOVERGENQ9NVG8
HOGENOMQ9NVG8
Homologs : HomoloGeneTBC1D13
Homology/Alignments : Family Browser (UCSC)TBC1D13
Gene fusions - Rearrangements
Tumor Fusion PortalTBC1D13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D13
dbVarTBC1D13
ClinVarTBC1D13
1000_GenomesTBC1D13 
Exome Variant ServerTBC1D13
ExAC (Exome Aggregation Consortium)ENSG00000107021
GNOMAD BrowserENSG00000107021
Genetic variants : HAPMAP54662
Genomic Variants (DGV)TBC1D13 [DGVbeta]
DECIPHERTBC1D13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D13 
Mutations
ICGC Data PortalTBC1D13 
TCGA Data PortalTBC1D13 
Broad Tumor PortalTBC1D13
OASIS PortalTBC1D13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D13
DgiDB (Drug Gene Interaction Database)TBC1D13
DoCM (Curated mutations)TBC1D13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D13 (select a term)
intoGenTBC1D13
Cancer3DTBC1D13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616218   
Orphanet
DisGeNETTBC1D13
MedgenTBC1D13
Genetic Testing Registry TBC1D13
NextProtQ9NVG8 [Medical]
TSGene54662
GENETestsTBC1D13
Target ValidationTBC1D13
Huge Navigator TBC1D13 [HugePedia]
snp3D : Map Gene to Disease54662
BioCentury BCIQTBC1D13
ClinGenTBC1D13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54662
Chemical/Pharm GKB GenePA134898118
Clinical trialTBC1D13
Miscellaneous
canSAR (ICR)TBC1D13 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D13
EVEXTBC1D13
GoPubMedTBC1D13
iHOPTBC1D13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:37:43 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.