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TBC1D16 (TBC1 domain family member 16)

Identity

Alias_namesTBC1 domain family
Alias_symbol (synonym)MGC25062
FLJ20748
Other alias-
HGNC (Hugo) TBC1D16
LocusID (NCBI) 125058
Atlas_Id 52050
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79932343 and ends at 79950857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100132987 () / TBC1D16 (17q25.3)TBC1D16 (17q25.3) / ATP1B1 (1q24.2)TBC1D16 (17q25.3) / RNF213 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D16   28356
Cards
Entrez_Gene (NCBI)TBC1D16  125058  TBC1 domain family member 16
Aliases
GeneCards (Weizmann)TBC1D16
Ensembl hg19 (Hinxton)ENSG00000167291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167291 [Gene_View]  chr17:79932343-79950857 [Contig_View]  TBC1D16 [Vega]
ICGC DataPortalENSG00000167291
TCGA cBioPortalTBC1D16
AceView (NCBI)TBC1D16
Genatlas (Paris)TBC1D16
WikiGenes125058
SOURCE (Princeton)TBC1D16
Genetics Home Reference (NIH)TBC1D16
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D16  -     chr17:79932343-79950857 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D16  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblTBC1D16 - 17q25.3 [CytoView hg19]  TBC1D16 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBITBC1D16 [Mapview hg19]  TBC1D16 [Mapview hg38]
OMIM616637   
Gene and transcription
Genbank (Entrez)AB449902 AK000755 AK091923 AK097283 AL157485
RefSeq transcript (Entrez)NM_001271844 NM_001271845 NM_001271846 NM_019020
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D16
Cluster EST : UnigeneHs.369819 [ NCBI ]
CGAP (NCI)Hs.369819
Alternative Splicing GalleryENSG00000167291
Gene ExpressionTBC1D16 [ NCBI-GEO ]   TBC1D16 [ EBI - ARRAY_EXPRESS ]   TBC1D16 [ SEEK ]   TBC1D16 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125058
GTEX Portal (Tissue expression)TBC1D16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBP0
Splice isoforms : SwissVarQ8TBP0
PhosPhoSitePlusQ8TBP0
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D16
DMDM Disease mutations125058
Blocks (Seattle)TBC1D16
SuperfamilyQ8TBP0
Human Protein AtlasENSG00000167291
Peptide AtlasQ8TBP0
HPRD10261
IPIIPI00290824   IPI01010267   IPI00060934   IPI00004564   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBP0
IntAct (EBI)Q8TBP0
FunCoupENSG00000167291
BioGRIDTBC1D16
STRING (EMBL)TBC1D16
ZODIACTBC1D16
Ontologies - Pathways
QuickGOQ8TBP0
Ontology : AmiGOregulation of receptor recycling  GTPase activator activity  protein binding  early endosome  cytosol  intracellular protein transport  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  regulation of cilium assembly  
Ontology : EGO-EBIregulation of receptor recycling  GTPase activator activity  protein binding  early endosome  cytosol  intracellular protein transport  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  regulation of cilium assembly  
NDEx NetworkTBC1D16
Atlas of Cancer Signalling NetworkTBC1D16
Wikipedia pathwaysTBC1D16
Orthology - Evolution
OrthoDB125058
GeneTree (enSembl)ENSG00000167291
Phylogenetic Trees/Animal Genes : TreeFamTBC1D16
HOVERGENQ8TBP0
HOGENOMQ8TBP0
Homologs : HomoloGeneTBC1D16
Homology/Alignments : Family Browser (UCSC)TBC1D16
Gene fusions - Rearrangements
Fusion : MitelmanTBC1D16/RNF213 [17q25.3/17q25.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D16
dbVarTBC1D16
ClinVarTBC1D16
1000_GenomesTBC1D16 
Exome Variant ServerTBC1D16
ExAC (Exome Aggregation Consortium)TBC1D16 (select the gene name)
Genetic variants : HAPMAP125058
Genomic Variants (DGV)TBC1D16 [DGVbeta]
DECIPHERTBC1D16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D16 
Mutations
ICGC Data PortalTBC1D16 
TCGA Data PortalTBC1D16 
Broad Tumor PortalTBC1D16
OASIS PortalTBC1D16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D16
DgiDB (Drug Gene Interaction Database)TBC1D16
DoCM (Curated mutations)TBC1D16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D16 (select a term)
intoGenTBC1D16
Cancer3DTBC1D16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616637   
Orphanet
MedgenTBC1D16
Genetic Testing Registry TBC1D16
NextProtQ8TBP0 [Medical]
TSGene125058
GENETestsTBC1D16
Target ValidationTBC1D16
Huge Navigator TBC1D16 [HugePedia]
snp3D : Map Gene to Disease125058
BioCentury BCIQTBC1D16
ClinGenTBC1D16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125058
Chemical/Pharm GKB GenePA134881634
Clinical trialTBC1D16
Miscellaneous
canSAR (ICR)TBC1D16 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D16
EVEXTBC1D16
GoPubMedTBC1D16
iHOPTBC1D16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:38 CEST 2017

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