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TBC1D19 (TBC1 domain family member 19)

Identity

Alias_namesTBC1 domain family, member 19
Alias_symbol (synonym)FLJ11082
Other alias-
HGNC (Hugo) TBC1D19
LocusID (NCBI) 55296
Atlas_Id 74517
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 26583924 and ends at 26756213 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TBC1D19 (4p15.2) / ANAPC4 (4p15.2)TBC1D19 (4p15.2) / MON2 (12q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D19   25624
Cards
Entrez_Gene (NCBI)TBC1D19  55296  TBC1 domain family member 19
Aliases
GeneCards (Weizmann)TBC1D19
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:26583924-26756213 [Contig_View]  TBC1D19 [Vega]
TCGA cBioPortalTBC1D19
AceView (NCBI)TBC1D19
Genatlas (Paris)TBC1D19
WikiGenes55296
SOURCE (Princeton)TBC1D19
Genetics Home Reference (NIH)TBC1D19
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D19  -     chr4:26583924-26756213 +  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D19  -     4p15.2   [Description]    (hg19-Feb_2009)
EnsemblTBC1D19 - 4p15.2 [CytoView hg19]  TBC1D19 - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBITBC1D19 [Mapview hg19]  TBC1D19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB449905 AF075043 AI034462 AK001944 AK225395
RefSeq transcript (Entrez)NM_001292054 NM_018317
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D19
Cluster EST : UnigeneHs.479403 [ NCBI ]
CGAP (NCI)Hs.479403
Gene ExpressionTBC1D19 [ NCBI-GEO ]   TBC1D19 [ EBI - ARRAY_EXPRESS ]   TBC1D19 [ SEEK ]   TBC1D19 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55296
GTEX Portal (Tissue expression)TBC1D19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5T2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5T2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5T2
Splice isoforms : SwissVarQ8N5T2
PhosPhoSitePlusQ8N5T2
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D19
DMDM Disease mutations55296
Blocks (Seattle)TBC1D19
SuperfamilyQ8N5T2
Peptide AtlasQ8N5T2
HPRD07730
IPIIPI00551003   IPI00923567   IPI00967177   IPI00963833   IPI00964146   IPI00965458   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5T2
IntAct (EBI)Q8N5T2
BioGRIDTBC1D19
STRING (EMBL)TBC1D19
ZODIACTBC1D19
Ontologies - Pathways
QuickGOQ8N5T2
Ontology : AmiGOGTPase activator activity  protein binding  positive regulation of GTPase activity  regulation of cilium assembly  
Ontology : EGO-EBIGTPase activator activity  protein binding  positive regulation of GTPase activity  regulation of cilium assembly  
NDEx NetworkTBC1D19
Atlas of Cancer Signalling NetworkTBC1D19
Wikipedia pathwaysTBC1D19
Orthology - Evolution
OrthoDB55296
Phylogenetic Trees/Animal Genes : TreeFamTBC1D19
HOVERGENQ8N5T2
HOGENOMQ8N5T2
Homologs : HomoloGeneTBC1D19
Homology/Alignments : Family Browser (UCSC)TBC1D19
Gene fusions - Rearrangements
Tumor Fusion PortalTBC1D19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D19
dbVarTBC1D19
ClinVarTBC1D19
1000_GenomesTBC1D19 
Exome Variant ServerTBC1D19
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55296
Genomic Variants (DGV)TBC1D19 [DGVbeta]
DECIPHERTBC1D19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D19 
Mutations
ICGC Data PortalTBC1D19 
TCGA Data PortalTBC1D19 
Broad Tumor PortalTBC1D19
OASIS PortalTBC1D19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D19
DgiDB (Drug Gene Interaction Database)TBC1D19
DoCM (Curated mutations)TBC1D19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D19 (select a term)
intoGenTBC1D19
Cancer3DTBC1D19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTBC1D19
MedgenTBC1D19
Genetic Testing Registry TBC1D19
NextProtQ8N5T2 [Medical]
TSGene55296
GENETestsTBC1D19
Target ValidationTBC1D19
Huge Navigator TBC1D19 [HugePedia]
snp3D : Map Gene to Disease55296
BioCentury BCIQTBC1D19
ClinGenTBC1D19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55296
Chemical/Pharm GKB GenePA134980991
Clinical trialTBC1D19
Miscellaneous
canSAR (ICR)TBC1D19 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D19
EVEXTBC1D19
GoPubMedTBC1D19
iHOPTBC1D19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:01 CET 2017

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