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TBC1D19 (TBC1 domain family member 19)

Identity

Alias (NCBI)-
HGNC (Hugo) TBC1D19
HGNC Alias symbFLJ11082
HGNC Previous nameTBC1 domain family, member 19
LocusID (NCBI) 55296
Atlas_Id 74517
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 26584084 and ends at 26756223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TBC1D19 (4p15.2) / ANAPC4 (4p15.2)TBC1D19 (4p15.2) / MON2 (12q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBC1D19   25624
Cards
Entrez_Gene (NCBI)TBC1D19    TBC1 domain family member 19
Aliases
GeneCards (Weizmann)TBC1D19
Ensembl hg19 (Hinxton)ENSG00000109680 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109680 [Gene_View]  ENSG00000109680 [Sequence]  chr4:26584084-26756223 [Contig_View]  TBC1D19 [Vega]
ICGC DataPortalENSG00000109680
TCGA cBioPortalTBC1D19
AceView (NCBI)TBC1D19
Genatlas (Paris)TBC1D19
SOURCE (Princeton)TBC1D19
Genetics Home Reference (NIH)TBC1D19
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D19  -     chr4:26584084-26756223 +  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D19  -     4p15.2   [Description]    (hg19-Feb_2009)
GoldenPathTBC1D19 - 4p15.2 [CytoView hg19]  TBC1D19 - 4p15.2 [CytoView hg38]
ImmunoBaseENSG00000109680
Genome Data Viewer NCBITBC1D19 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB449905 AF075043 AI034462 AK001944 AK225395
RefSeq transcript (Entrez)NM_001292054 NM_018317
Consensus coding sequences : CCDS (NCBI)TBC1D19
Gene ExpressionTBC1D19 [ NCBI-GEO ]   TBC1D19 [ EBI - ARRAY_EXPRESS ]   TBC1D19 [ SEEK ]   TBC1D19 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D19 [ Firebrowse - Broad ]
GenevisibleExpression of TBC1D19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55296
GTEX Portal (Tissue expression)TBC1D19
Human Protein AtlasENSG00000109680-TBC1D19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5T2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5T2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5T2
PhosPhoSitePlusQ8N5T2
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom    Rab-GTPase_TBC_sf    TBC1D19   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D19
SuperfamilyQ8N5T2
AlphaFold pdb e-kbQ8N5T2   
Human Protein Atlas [tissue]ENSG00000109680-TBC1D19 [tissue]
HPRD07730
Protein Interaction databases
DIP (DOE-UCLA)Q8N5T2
IntAct (EBI)Q8N5T2
BioGRIDTBC1D19
STRING (EMBL)TBC1D19
ZODIACTBC1D19
Ontologies - Pathways
QuickGOQ8N5T2
Ontology : AmiGOGTPase activator activity  protein binding  regulation of catalytic activity  regulation of cilium assembly  
Ontology : EGO-EBIGTPase activator activity  protein binding  regulation of catalytic activity  regulation of cilium assembly  
NDEx NetworkTBC1D19
Atlas of Cancer Signalling NetworkTBC1D19
Wikipedia pathwaysTBC1D19
Orthology - Evolution
OrthoDB55296
GeneTree (enSembl)ENSG00000109680
Phylogenetic Trees/Animal Genes : TreeFamTBC1D19
Homologs : HomoloGeneTBC1D19
Homology/Alignments : Family Browser (UCSC)TBC1D19
Gene fusions - Rearrangements
Fusion : QuiverTBC1D19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D19
dbVarTBC1D19
ClinVarTBC1D19
MonarchTBC1D19
1000_GenomesTBC1D19 
Exome Variant ServerTBC1D19
GNOMAD BrowserENSG00000109680
Varsome BrowserTBC1D19
ACMGTBC1D19 variants
VarityQ8N5T2
Genomic Variants (DGV)TBC1D19 [DGVbeta]
DECIPHERTBC1D19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D19 
Mutations
ICGC Data PortalTBC1D19 
TCGA Data PortalTBC1D19 
Broad Tumor PortalTBC1D19
OASIS PortalTBC1D19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBC1D19
Mutations and Diseases : HGMDTBC1D19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBC1D19
DgiDB (Drug Gene Interaction Database)TBC1D19
DoCM (Curated mutations)TBC1D19
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D19
Cancer3DTBC1D19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTBC1D19
MedgenTBC1D19
Genetic Testing Registry TBC1D19
NextProtQ8N5T2 [Medical]
GENETestsTBC1D19
Target ValidationTBC1D19
Huge Navigator TBC1D19 [HugePedia]
ClinGenTBC1D19
Clinical trials, drugs, therapy
MyCancerGenomeTBC1D19
Protein Interactions : CTDTBC1D19
Pharm GKB GenePA134980991
PharosQ8N5T2
Clinical trialTBC1D19
Miscellaneous
canSAR (ICR)TBC1D19
HarmonizomeTBC1D19
DataMed IndexTBC1D19
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBC1D19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:56 CEST 2021

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