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TBC1D22A-AS1 (TBC1D22A antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) TBC1D22A-AS1
LocusID (NCBI) 642757
Atlas_Id 74522
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 47309988 and ends at 47311938 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D22A-AS1   51221
Cards
Entrez_Gene (NCBI)TBC1D22A-AS1  642757  TBC1D22A antisense RNA 1
Aliases
GeneCards (Weizmann)TBC1D22A-AS1
Ensembl hg19 (Hinxton) [Gene_View]  chr22:47309988-47311938 [Contig_View]  TBC1D22A-AS1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:47309988-47311938 [Contig_View]  TBC1D22A-AS1 [Vega]
TCGA cBioPortalTBC1D22A-AS1
AceView (NCBI)TBC1D22A-AS1
Genatlas (Paris)TBC1D22A-AS1
WikiGenes642757
SOURCE (Princeton)TBC1D22A-AS1
Genetics Home Reference (NIH)TBC1D22A-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)TBC1D22A-AS1  -     chr22:47309988-47311938 -  22q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TBC1D22A-AS1  -     22q13.31   [Description]    (hg38-Dec_2013)
EnsemblTBC1D22A-AS1 - 22q13.31 [CytoView hg19]  TBC1D22A-AS1 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBITBC1D22A-AS1 [Mapview hg19]  TBC1D22A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057318 BC041833 CR456602
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)TBC1D22A-AS1
Cluster EST : UnigeneHs.742347 [ NCBI ]
CGAP (NCI)Hs.742347
Gene ExpressionTBC1D22A-AS1 [ NCBI-GEO ]   TBC1D22A-AS1 [ EBI - ARRAY_EXPRESS ]   TBC1D22A-AS1 [ SEEK ]   TBC1D22A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D22A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642757
GTEX Portal (Tissue expression)TBC1D22A-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M85
Splice isoforms : SwissVarQ96M85
PhosPhoSitePlusQ96M85
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TBC1D22A-AS1
DMDM Disease mutations642757
Blocks (Seattle)TBC1D22A-AS1
SuperfamilyQ96M85
Peptide AtlasQ96M85
IPIIPI00741660   
Protein Interaction databases
DIP (DOE-UCLA)Q96M85
IntAct (EBI)Q96M85
BioGRIDTBC1D22A-AS1
STRING (EMBL)TBC1D22A-AS1
ZODIACTBC1D22A-AS1
Ontologies - Pathways
QuickGOQ96M85
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTBC1D22A-AS1
Atlas of Cancer Signalling NetworkTBC1D22A-AS1
Wikipedia pathwaysTBC1D22A-AS1
Orthology - Evolution
OrthoDB642757
Phylogenetic Trees/Animal Genes : TreeFamTBC1D22A-AS1
HOVERGENQ96M85
HOGENOMQ96M85
Homologs : HomoloGeneTBC1D22A-AS1
Homology/Alignments : Family Browser (UCSC)TBC1D22A-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D22A-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D22A-AS1
dbVarTBC1D22A-AS1
ClinVarTBC1D22A-AS1
1000_GenomesTBC1D22A-AS1 
Exome Variant ServerTBC1D22A-AS1
ExAC (Exome Aggregation Consortium)TBC1D22A-AS1 (select the gene name)
Genetic variants : HAPMAP642757
Genomic Variants (DGV)TBC1D22A-AS1 [DGVbeta]
DECIPHER (Syndromes)22:47309988-47311938  
CONAN: Copy Number AnalysisTBC1D22A-AS1 
Mutations
ICGC Data PortalTBC1D22A-AS1 
TCGA Data PortalTBC1D22A-AS1 
Broad Tumor PortalTBC1D22A-AS1
OASIS PortalTBC1D22A-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D22A-AS1
BioMutasearch TBC1D22A-AS1
DgiDB (Drug Gene Interaction Database)TBC1D22A-AS1
DoCM (Curated mutations)TBC1D22A-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D22A-AS1 (select a term)
intoGenTBC1D22A-AS1
Cancer3DTBC1D22A-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTBC1D22A-AS1
Genetic Testing Registry TBC1D22A-AS1
NextProtQ96M85 [Medical]
TSGene642757
GENETestsTBC1D22A-AS1
Huge Navigator TBC1D22A-AS1 [HugePedia]
snp3D : Map Gene to Disease642757
BioCentury BCIQTBC1D22A-AS1
ClinGenTBC1D22A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642757
Clinical trialTBC1D22A-AS1
Miscellaneous
canSAR (ICR)TBC1D22A-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D22A-AS1
EVEXTBC1D22A-AS1
GoPubMedTBC1D22A-AS1
iHOPTBC1D22A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:31 CET 2017

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