Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TBC1D28 (TBC1 domain family member 28)

Identity

Alias (NCBI)-
HGNC (Hugo) TBC1D28
HGNC Alias symbFLJ40244
HGNC Previous nameTBC1 domain family, member 28
LocusID (NCBI) 254272
Atlas_Id 56878
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18635529 and ends at 18644427 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBC1D28   26858
Cards
Entrez_Gene (NCBI)TBC1D28    TBC1 domain family member 28
Aliases
GeneCards (Weizmann)TBC1D28
Ensembl hg19 (Hinxton)ENSG00000189375 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189375 [Gene_View]  ENSG00000189375 [Sequence]  chr17:18635529-18644427 [Contig_View]  TBC1D28 [Vega]
ICGC DataPortalENSG00000189375
TCGA cBioPortalTBC1D28
AceView (NCBI)TBC1D28
Genatlas (Paris)TBC1D28
SOURCE (Princeton)TBC1D28
Genetics Home Reference (NIH)TBC1D28
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D28  -     chr17:18635529-18644427 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D28  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathTBC1D28 - 17p11.2 [CytoView hg19]  TBC1D28 - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000189375
Genome Data Viewer NCBITBC1D28 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK097563 AL137747 BC112012 BC112016 DB065322
RefSeq transcript (Entrez)NM_001039397
Consensus coding sequences : CCDS (NCBI)TBC1D28
Gene ExpressionTBC1D28 [ NCBI-GEO ]   TBC1D28 [ EBI - ARRAY_EXPRESS ]   TBC1D28 [ SEEK ]   TBC1D28 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D28 [ Firebrowse - Broad ]
GenevisibleExpression of TBC1D28 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254272
GTEX Portal (Tissue expression)TBC1D28
Human Protein AtlasENSG00000189375-TBC1D28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M2D7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M2D7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M2D7
PhosPhoSitePlusQ2M2D7
Domains : Interpro (EBI)Rab-GTPase-TBC_dom    Rab-GTPase_TBC_sf   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Conserved Domain (NCBI)TBC1D28
SuperfamilyQ2M2D7
AlphaFold pdb e-kbQ2M2D7   
Human Protein Atlas [tissue]ENSG00000189375-TBC1D28 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q2M2D7
IntAct (EBI)Q2M2D7
BioGRIDTBC1D28
STRING (EMBL)TBC1D28
ZODIACTBC1D28
Ontologies - Pathways
QuickGOQ2M2D7
Ontology : AmiGOGTPase activator activity  intracellular protein transport  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular protein transport  activation of GTPase activity  
NDEx NetworkTBC1D28
Atlas of Cancer Signalling NetworkTBC1D28
Wikipedia pathwaysTBC1D28
Orthology - Evolution
OrthoDB254272
GeneTree (enSembl)ENSG00000189375
Phylogenetic Trees/Animal Genes : TreeFamTBC1D28
Homologs : HomoloGeneTBC1D28
Homology/Alignments : Family Browser (UCSC)TBC1D28
Gene fusions - Rearrangements
Fusion : QuiverTBC1D28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D28
dbVarTBC1D28
ClinVarTBC1D28
MonarchTBC1D28
1000_GenomesTBC1D28 
Exome Variant ServerTBC1D28
GNOMAD BrowserENSG00000189375
Varsome BrowserTBC1D28
ACMGTBC1D28 variants
VarityQ2M2D7
Genomic Variants (DGV)TBC1D28 [DGVbeta]
DECIPHERTBC1D28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D28 
Mutations
ICGC Data PortalTBC1D28 
TCGA Data PortalTBC1D28 
Broad Tumor PortalTBC1D28
OASIS PortalTBC1D28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D28  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBC1D28
Mutations and Diseases : HGMDTBC1D28
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBC1D28
DgiDB (Drug Gene Interaction Database)TBC1D28
DoCM (Curated mutations)TBC1D28
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D28
Cancer3DTBC1D28
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTBC1D28
MedgenTBC1D28
Genetic Testing Registry TBC1D28
NextProtQ2M2D7 [Medical]
GENETestsTBC1D28
Target ValidationTBC1D28
Huge Navigator TBC1D28 [HugePedia]
ClinGenTBC1D28
Clinical trials, drugs, therapy
MyCancerGenomeTBC1D28
Protein Interactions : CTDTBC1D28
Pharm GKB GenePA162405287
PharosQ2M2D7
Clinical trialTBC1D28
Miscellaneous
canSAR (ICR)TBC1D28
HarmonizomeTBC1D28
DataMed IndexTBC1D28
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBC1D28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:23 CEST 2021

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