Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TBC1D28 (TBC1 domain family, member 28)

Identity

Alias_namesTBC1 domain family, member 28
Alias_symbol (synonym)FLJ40244
Other alias-
HGNC (Hugo) TBC1D28
LocusID (NCBI) 254272
Atlas_Id 74527
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18538842 and ends at 18547740 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D28   26858
Cards
Entrez_Gene (NCBI)TBC1D28  254272  TBC1 domain family, member 28
Aliases
GeneCards (Weizmann)TBC1D28
Ensembl hg19 (Hinxton)ENSG00000189375 [Gene_View]  chr17:18538842-18547740 [Contig_View]  TBC1D28 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189375 [Gene_View]  chr17:18538842-18547740 [Contig_View]  TBC1D28 [Vega]
ICGC DataPortalENSG00000189375
TCGA cBioPortalTBC1D28
AceView (NCBI)TBC1D28
Genatlas (Paris)TBC1D28
WikiGenes254272
SOURCE (Princeton)TBC1D28
Genetics Home Reference (NIH)TBC1D28
Genomic and cartography
GoldenPath hg19 (UCSC)TBC1D28  -     chr17:18538842-18547740 -  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TBC1D28  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblTBC1D28 - 17p11.2 [CytoView hg19]  TBC1D28 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBITBC1D28 [Mapview hg19]  TBC1D28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097563 AK292544 AL137747 BC112012 BC112016
RefSeq transcript (Entrez)NM_001039397
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)TBC1D28
Cluster EST : UnigeneHs.567880 [ NCBI ]
CGAP (NCI)Hs.567880
Alternative Splicing GalleryENSG00000189375
Gene ExpressionTBC1D28 [ NCBI-GEO ]   TBC1D28 [ EBI - ARRAY_EXPRESS ]   TBC1D28 [ SEEK ]   TBC1D28 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254272
GTEX Portal (Tissue expression)TBC1D28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M2D7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M2D7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M2D7
Splice isoforms : SwissVarQ2M2D7
PhosPhoSitePlusQ2M2D7
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Conserved Domain (NCBI)TBC1D28
DMDM Disease mutations254272
Blocks (Seattle)TBC1D28
SuperfamilyQ2M2D7
Human Protein AtlasENSG00000189375
Peptide AtlasQ2M2D7
IPIIPI00556226   
Protein Interaction databases
DIP (DOE-UCLA)Q2M2D7
IntAct (EBI)Q2M2D7
FunCoupENSG00000189375
BioGRIDTBC1D28
STRING (EMBL)TBC1D28
ZODIACTBC1D28
Ontologies - Pathways
QuickGOQ2M2D7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTBC1D28
Atlas of Cancer Signalling NetworkTBC1D28
Wikipedia pathwaysTBC1D28
Orthology - Evolution
OrthoDB254272
GeneTree (enSembl)ENSG00000189375
Phylogenetic Trees/Animal Genes : TreeFamTBC1D28
HOVERGENQ2M2D7
HOGENOMQ2M2D7
Homologs : HomoloGeneTBC1D28
Homology/Alignments : Family Browser (UCSC)TBC1D28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D28
dbVarTBC1D28
ClinVarTBC1D28
1000_GenomesTBC1D28 
Exome Variant ServerTBC1D28
ExAC (Exome Aggregation Consortium)TBC1D28 (select the gene name)
Genetic variants : HAPMAP254272
Genomic Variants (DGV)TBC1D28 [DGVbeta]
DECIPHER (Syndromes)17:18538842-18547740  ENSG00000189375
CONAN: Copy Number AnalysisTBC1D28 
Mutations
ICGC Data PortalTBC1D28 
TCGA Data PortalTBC1D28 
Broad Tumor PortalTBC1D28
OASIS PortalTBC1D28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D28
DgiDB (Drug Gene Interaction Database)TBC1D28
DoCM (Curated mutations)TBC1D28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D28 (select a term)
intoGenTBC1D28
Cancer3DTBC1D28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTBC1D28
Genetic Testing Registry TBC1D28
NextProtQ2M2D7 [Medical]
TSGene254272
GENETestsTBC1D28
Huge Navigator TBC1D28 [HugePedia]
snp3D : Map Gene to Disease254272
BioCentury BCIQTBC1D28
ClinGenTBC1D28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254272
Chemical/Pharm GKB GenePA162405287
Clinical trialTBC1D28
Miscellaneous
canSAR (ICR)TBC1D28 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D28
EVEXTBC1D28
GoPubMedTBC1D28
iHOPTBC1D28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:32 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.