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TBC1D29 (TBC1 domain family member 29)

Identity

Alias_namesTBC1 domain family, member 29
Alias_symbol (synonym)DKFZP434O047
Other alias-
HGNC (Hugo) TBC1D29
LocusID (NCBI) 26083
Atlas_Id 74528
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30559566 and ends at 30563491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D29   24509
Cards
Entrez_Gene (NCBI)TBC1D29  26083  TBC1 domain family member 29
Aliases
GeneCards (Weizmann)TBC1D29
Ensembl hg19 (Hinxton)ENSG00000266733 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266733 [Gene_View]  chr17:30559566-30563491 [Contig_View]  TBC1D29 [Vega]
ICGC DataPortalENSG00000266733
TCGA cBioPortalTBC1D29
AceView (NCBI)TBC1D29
Genatlas (Paris)TBC1D29
WikiGenes26083
SOURCE (Princeton)TBC1D29
Genetics Home Reference (NIH)TBC1D29
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D29  -     chr17:30559566-30563491 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D29  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblTBC1D29 - 17q11.2 [CytoView hg19]  TBC1D29 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBITBC1D29 [Mapview hg19]  TBC1D29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL117394 BC096718 BC098126 BC098273
RefSeq transcript (Entrez)NM_015594
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D29
Cluster EST : UnigeneHs.241421 [ NCBI ]
CGAP (NCI)Hs.241421
Alternative Splicing GalleryENSG00000266733
Gene ExpressionTBC1D29 [ NCBI-GEO ]   TBC1D29 [ EBI - ARRAY_EXPRESS ]   TBC1D29 [ SEEK ]   TBC1D29 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26083
GTEX Portal (Tissue expression)TBC1D29
Human Protein AtlasENSG00000266733-TBC1D29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFV1
Splice isoforms : SwissVarQ9UFV1
PhosPhoSitePlusQ9UFV1
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TBC1D29
DMDM Disease mutations26083
Blocks (Seattle)TBC1D29
SuperfamilyQ9UFV1
Human Protein Atlas [tissue]ENSG00000266733-TBC1D29 [tissue]
Peptide AtlasQ9UFV1
HPRD13162
IPIIPI00024032   IPI00607897   IPI00920952   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFV1
IntAct (EBI)Q9UFV1
FunCoupENSG00000266733
BioGRIDTBC1D29
STRING (EMBL)TBC1D29
ZODIACTBC1D29
Ontologies - Pathways
QuickGOQ9UFV1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTBC1D29
Atlas of Cancer Signalling NetworkTBC1D29
Wikipedia pathwaysTBC1D29
Orthology - Evolution
OrthoDB26083
GeneTree (enSembl)ENSG00000266733
Phylogenetic Trees/Animal Genes : TreeFamTBC1D29
HOVERGENQ9UFV1
HOGENOMQ9UFV1
Homologs : HomoloGeneTBC1D29
Homology/Alignments : Family Browser (UCSC)TBC1D29
Gene fusions - Rearrangements
Tumor Fusion PortalTBC1D29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D29
dbVarTBC1D29
ClinVarTBC1D29
1000_GenomesTBC1D29 
Exome Variant ServerTBC1D29
ExAC (Exome Aggregation Consortium)ENSG00000266733
GNOMAD BrowserENSG00000266733
Genetic variants : HAPMAP26083
Genomic Variants (DGV)TBC1D29 [DGVbeta]
DECIPHERTBC1D29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D29 
Mutations
ICGC Data PortalTBC1D29 
TCGA Data PortalTBC1D29 
Broad Tumor PortalTBC1D29
OASIS PortalTBC1D29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D29
DgiDB (Drug Gene Interaction Database)TBC1D29
DoCM (Curated mutations)TBC1D29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D29 (select a term)
intoGenTBC1D29
Cancer3DTBC1D29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTBC1D29
MedgenTBC1D29
Genetic Testing Registry TBC1D29
NextProtQ9UFV1 [Medical]
TSGene26083
GENETestsTBC1D29
Target ValidationTBC1D29
Huge Navigator TBC1D29 [HugePedia]
snp3D : Map Gene to Disease26083
BioCentury BCIQTBC1D29
ClinGenTBC1D29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26083
Chemical/Pharm GKB GenePA162405312
Clinical trialTBC1D29
Miscellaneous
canSAR (ICR)TBC1D29 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D29
EVEXTBC1D29
GoPubMedTBC1D29
iHOPTBC1D29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:37:02 CET 2017

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