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TBC1D31 (TBC1 domain family member 31)

Identity

Alias_namesWDR67
WD repeat domain 67
TBC1 domain family, member 31
Alias_symbol (synonym)MGC21654
Gm85
Other alias
HGNC (Hugo) TBC1D31
LocusID (NCBI) 93594
Atlas_Id 54691
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 123072680 and ends at 123152152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TBC1D31 (8q24.13) / NUP133 (1q42.13)TBC1D31 (8q24.13) / ZNF704 (8q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D31   30888
Cards
Entrez_Gene (NCBI)TBC1D31  93594  TBC1 domain family member 31
AliasesGm85; WDR67
GeneCards (Weizmann)TBC1D31
Ensembl hg19 (Hinxton)ENSG00000156787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156787 [Gene_View]  chr8:123072680-123152152 [Contig_View]  TBC1D31 [Vega]
ICGC DataPortalENSG00000156787
TCGA cBioPortalTBC1D31
AceView (NCBI)TBC1D31
Genatlas (Paris)TBC1D31
WikiGenes93594
SOURCE (Princeton)TBC1D31
Genetics Home Reference (NIH)TBC1D31
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D31  -     chr8:123072680-123152152 +  8q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D31  -     8q24.13   [Description]    (hg19-Feb_2009)
EnsemblTBC1D31 - 8q24.13 [CytoView hg19]  TBC1D31 - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBITBC1D31 [Mapview hg19]  TBC1D31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025686 AK056434 AK092041 AK094612 BC026969
RefSeq transcript (Entrez)NM_001145088 NM_001330606 NM_145647
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D31
Cluster EST : UnigeneHs.492716 [ NCBI ]
CGAP (NCI)Hs.492716
Alternative Splicing GalleryENSG00000156787
Gene ExpressionTBC1D31 [ NCBI-GEO ]   TBC1D31 [ EBI - ARRAY_EXPRESS ]   TBC1D31 [ SEEK ]   TBC1D31 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93594
GTEX Portal (Tissue expression)TBC1D31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DN5
Splice isoforms : SwissVarQ96DN5
PhosPhoSitePlusQ96DN5
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)    WD_REPEATS_1 (PS00678)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)TBC1D31
DMDM Disease mutations93594
Blocks (Seattle)TBC1D31
SuperfamilyQ96DN5
Human Protein AtlasENSG00000156787
Peptide AtlasQ96DN5
HPRD11319
IPIIPI00061009   IPI00152231   IPI00296003   IPI00178319   IPI00974175   IPI01014199   IPI00982885   IPI00979774   IPI00974144   IPI00984970   IPI00981054   IPI00978368   IPI01009219   
Protein Interaction databases
DIP (DOE-UCLA)Q96DN5
IntAct (EBI)Q96DN5
FunCoupENSG00000156787
BioGRIDTBC1D31
STRING (EMBL)TBC1D31
ZODIACTBC1D31
Ontologies - Pathways
QuickGOQ96DN5
Ontology : AmiGOcentrosome  
Ontology : EGO-EBIcentrosome  
NDEx NetworkTBC1D31
Atlas of Cancer Signalling NetworkTBC1D31
Wikipedia pathwaysTBC1D31
Orthology - Evolution
OrthoDB93594
GeneTree (enSembl)ENSG00000156787
Phylogenetic Trees/Animal Genes : TreeFamTBC1D31
HOVERGENQ96DN5
HOGENOMQ96DN5
Homologs : HomoloGeneTBC1D31
Homology/Alignments : Family Browser (UCSC)TBC1D31
Gene fusions - Rearrangements
Fusion : MitelmanTBC1D31/ZNF704 [8q24.13/8q21.13]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D31
dbVarTBC1D31
ClinVarTBC1D31
1000_GenomesTBC1D31 
Exome Variant ServerTBC1D31
ExAC (Exome Aggregation Consortium)TBC1D31 (select the gene name)
Genetic variants : HAPMAP93594
Genomic Variants (DGV)TBC1D31 [DGVbeta]
DECIPHERTBC1D31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D31 
Mutations
ICGC Data PortalTBC1D31 
TCGA Data PortalTBC1D31 
Broad Tumor PortalTBC1D31
OASIS PortalTBC1D31 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D31
BioMutasearch TBC1D31
DgiDB (Drug Gene Interaction Database)TBC1D31
DoCM (Curated mutations)TBC1D31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D31 (select a term)
intoGenTBC1D31
Cancer3DTBC1D31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTBC1D31
Genetic Testing Registry TBC1D31
NextProtQ96DN5 [Medical]
TSGene93594
GENETestsTBC1D31
Target ValidationTBC1D31
Huge Navigator TBC1D31 [HugePedia]
snp3D : Map Gene to Disease93594
BioCentury BCIQTBC1D31
ClinGenTBC1D31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93594
Chemical/Pharm GKB GenePA142670600
Clinical trialTBC1D31
Miscellaneous
canSAR (ICR)TBC1D31 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D31
EVEXTBC1D31
GoPubMedTBC1D31
iHOPTBC1D31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:41 CEST 2017

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