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TBC1D32 (TBC1 domain family member 32)

Identity

Alias_namesC6orf171
C6orf170
chromosome 6 open reading frame 171
chromosome 6 open reading frame 170
TBC1 domain family, member 32
Alias_symbol (synonym)FLJ30899
dJ310J6.1
FLJ34235
bA57L9.1
BROMI
Other aliasbA301B7.2
HGNC (Hugo) TBC1D32
LocusID (NCBI) 221322
Atlas_Id 74530
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 121079494 and ends at 121334500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAA20 (20p11.23) / TBC1D32 (6q22.31)TBC1D32 (6q22.31) / RSPO3 (6q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q22;q22) TBC1D32/RSPO3


External links

Nomenclature
HGNC (Hugo)TBC1D32   21485
Cards
Entrez_Gene (NCBI)TBC1D32  221322  TBC1 domain family member 32
AliasesBROMI; C6orf170; C6orf171; bA301B7.2; 
bA57L9.1; dJ310J6.1
GeneCards (Weizmann)TBC1D32
Ensembl hg19 (Hinxton)ENSG00000146350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146350 [Gene_View]  ENSG00000146350 [Sequence]  chr6:121079494-121334500 [Contig_View]  TBC1D32 [Vega]
ICGC DataPortalENSG00000146350
TCGA cBioPortalTBC1D32
AceView (NCBI)TBC1D32
Genatlas (Paris)TBC1D32
WikiGenes221322
SOURCE (Princeton)TBC1D32
Genetics Home Reference (NIH)TBC1D32
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D32  -     chr6:121079494-121334500 -  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D32  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblTBC1D32 - 6q22.31 [CytoView hg19]  TBC1D32 - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBITBC1D32 [Mapview hg19]  TBC1D32 [Mapview hg38]
OMIM615867   
Gene and transcription
Genbank (Entrez)AK055461 AK091554 AK125385 AK126259 AK131446
RefSeq transcript (Entrez)NM_152730
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D32
Cluster EST : UnigeneHs.121396 [ NCBI ]
CGAP (NCI)Hs.121396
Alternative Splicing GalleryENSG00000146350
Gene ExpressionTBC1D32 [ NCBI-GEO ]   TBC1D32 [ EBI - ARRAY_EXPRESS ]   TBC1D32 [ SEEK ]   TBC1D32 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221322
GTEX Portal (Tissue expression)TBC1D32
Human Protein AtlasENSG00000146350-TBC1D32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NH3
Splice isoforms : SwissVarQ96NH3
PhosPhoSitePlusQ96NH3
Domains : Interpro (EBI)BROMI    Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)BROMI (PF14961)   
Domain families : Pfam (NCBI)pfam14961   
Conserved Domain (NCBI)TBC1D32
DMDM Disease mutations221322
Blocks (Seattle)TBC1D32
SuperfamilyQ96NH3
Human Protein Atlas [tissue]ENSG00000146350-TBC1D32 [tissue]
Peptide AtlasQ96NH3
HPRD12867
IPIIPI00253835   IPI00465188   IPI01010796   IPI00913843   IPI00980619   
Protein Interaction databases
DIP (DOE-UCLA)Q96NH3
IntAct (EBI)Q96NH3
FunCoupENSG00000146350
BioGRIDTBC1D32
STRING (EMBL)TBC1D32
ZODIACTBC1D32
Ontologies - Pathways
QuickGOQ96NH3
Ontology : AmiGO###############################################################################################################################################################################################################################################################                    
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                    
NDEx NetworkTBC1D32
Atlas of Cancer Signalling NetworkTBC1D32
Wikipedia pathwaysTBC1D32
Orthology - Evolution
OrthoDB221322
GeneTree (enSembl)ENSG00000146350
Phylogenetic Trees/Animal Genes : TreeFamTBC1D32
HOVERGENQ96NH3
HOGENOMQ96NH3
Homologs : HomoloGeneTBC1D32
Homology/Alignments : Family Browser (UCSC)TBC1D32
Gene fusions - Rearrangements
Fusion : QuiverTBC1D32
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D32
dbVarTBC1D32
ClinVarTBC1D32
1000_GenomesTBC1D32 
Exome Variant ServerTBC1D32
ExAC (Exome Aggregation Consortium)ENSG00000146350
GNOMAD BrowserENSG00000146350
Varsome BrowserTBC1D32
Genetic variants : HAPMAP221322
Genomic Variants (DGV)TBC1D32 [DGVbeta]
DECIPHERTBC1D32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D32 
Mutations
ICGC Data PortalTBC1D32 
TCGA Data PortalTBC1D32 
Broad Tumor PortalTBC1D32
OASIS PortalTBC1D32 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D32
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D32
DgiDB (Drug Gene Interaction Database)TBC1D32
DoCM (Curated mutations)TBC1D32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D32 (select a term)
intoGenTBC1D32
Cancer3DTBC1D32(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615867   
Orphanet
DisGeNETTBC1D32
MedgenTBC1D32
Genetic Testing Registry TBC1D32
NextProtQ96NH3 [Medical]
TSGene221322
GENETestsTBC1D32
Target ValidationTBC1D32
Huge Navigator TBC1D32 [HugePedia]
snp3D : Map Gene to Disease221322
BioCentury BCIQTBC1D32
ClinGenTBC1D32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221322
Chemical/Pharm GKB GenePA134871908
Clinical trialTBC1D32
Miscellaneous
canSAR (ICR)TBC1D32 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D32
EVEXTBC1D32
GoPubMedTBC1D32
iHOPTBC1D32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:34:10 CEST 2018

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