Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TBC1D3B (TBC1 domain family member 3B)

Identity

Alias_namesTBC1D3I
TBC1 domain family, member 3I
TBC1 domain family, member 3B
Alias_symbol (synonym)PRC17
Other aliasTBC1D3L
HGNC (Hugo) TBC1D3B
LocusID (NCBI) 414059
Atlas_Id 45770
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36165681 and ends at 36176624 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D3B   27011
Cards
Entrez_Gene (NCBI)TBC1D3B  414059  TBC1 domain family member 3B
AliasesPRC17; TBC1D3I; TBC1D3L
GeneCards (Weizmann)TBC1D3B
Ensembl hg19 (Hinxton)ENSG00000274808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274808 [Gene_View]  chr17:36165681-36176624 [Contig_View]  TBC1D3B [Vega]
ICGC DataPortalENSG00000274808
TCGA cBioPortalTBC1D3B
AceView (NCBI)TBC1D3B
Genatlas (Paris)TBC1D3B
WikiGenes414059
SOURCE (Princeton)TBC1D3B
Genetics Home Reference (NIH)TBC1D3B
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3B  -     chr17:36165681-36176624 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3B  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblTBC1D3B - 17q12 [CytoView hg19]  TBC1D3B - 17q12 [CytoView hg38]
Mapping of homologs : NCBITBC1D3B [Mapview hg19]  TBC1D3B [Mapview hg38]
OMIM610144   
Gene and transcription
Genbank (Entrez)AF540953 AK292257 BC166651
RefSeq transcript (Entrez)NM_001001417
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614 NT_187661
Consensus coding sequences : CCDS (NCBI)TBC1D3B
Cluster EST : UnigeneHs.454716 [ NCBI ]
CGAP (NCI)Hs.454716
Alternative Splicing GalleryENSG00000274808
Gene ExpressionTBC1D3B [ NCBI-GEO ]   TBC1D3B [ EBI - ARRAY_EXPRESS ]   TBC1D3B [ SEEK ]   TBC1D3B [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414059
GTEX Portal (Tissue expression)TBC1D3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDS4
Splice isoforms : SwissVarA6NDS4
PhosPhoSitePlusA6NDS4
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3B
DMDM Disease mutations414059
Blocks (Seattle)TBC1D3B
SuperfamilyA6NDS4
Human Protein AtlasENSG00000274808
Peptide AtlasA6NDS4
HPRD11264
IPIIPI00748211   IPI00472526   IPI00788226   IPI00852844   IPI01014027   IPI01011070   IPI01014523   IPI00793316   IPI00940907   IPI00980712   IPI00974069   IPI00973567   
Protein Interaction databases
DIP (DOE-UCLA)A6NDS4
IntAct (EBI)A6NDS4
FunCoupENSG00000274808
BioGRIDTBC1D3B
STRING (EMBL)TBC1D3B
ZODIACTBC1D3B
Ontologies - Pathways
QuickGOA6NDS4
Ontology : AmiGOGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D3B
Atlas of Cancer Signalling NetworkTBC1D3B
Wikipedia pathwaysTBC1D3B
Orthology - Evolution
OrthoDB414059
GeneTree (enSembl)ENSG00000274808
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3B
HOVERGENA6NDS4
HOGENOMA6NDS4
Homologs : HomoloGeneTBC1D3B
Homology/Alignments : Family Browser (UCSC)TBC1D3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3B
dbVarTBC1D3B
ClinVarTBC1D3B
1000_GenomesTBC1D3B 
Exome Variant ServerTBC1D3B
ExAC (Exome Aggregation Consortium)TBC1D3B (select the gene name)
Genetic variants : HAPMAP414059
Genomic Variants (DGV)TBC1D3B [DGVbeta]
DECIPHERTBC1D3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3B 
Mutations
ICGC Data PortalTBC1D3B 
TCGA Data PortalTBC1D3B 
Broad Tumor PortalTBC1D3B
OASIS PortalTBC1D3B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D3B
DgiDB (Drug Gene Interaction Database)TBC1D3B
DoCM (Curated mutations)TBC1D3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3B (select a term)
intoGenTBC1D3B
Cancer3DTBC1D3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610144   
Orphanet
MedgenTBC1D3B
Genetic Testing Registry TBC1D3B
NextProtA6NDS4 [Medical]
TSGene414059
GENETestsTBC1D3B
Target ValidationTBC1D3B
Huge Navigator TBC1D3B [HugePedia]
snp3D : Map Gene to Disease414059
BioCentury BCIQTBC1D3B
ClinGenTBC1D3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414059
Chemical/Pharm GKB GenePA142670833
Clinical trialTBC1D3B
Miscellaneous
canSAR (ICR)TBC1D3B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D3B
EVEXTBC1D3B
GoPubMedTBC1D3B
iHOPTBC1D3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:58:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.