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TBC1D3B (TBC1 domain family member 3B)

Identity

Alias (NCBI)PRC17
TBC1D3I
TBC1D3L
HGNC (Hugo) TBC1D3B
HGNC Alias symbPRC17
HGNC Previous nameTBC1D3I
HGNC Previous nameTBC1 domain family, member 3I
 TBC1 domain family, member 3B
LocusID (NCBI) 414059
Atlas_Id 45770
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36165681 and ends at 36176624 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBC1D3B   27011
Cards
Entrez_Gene (NCBI)TBC1D3B    TBC1 domain family member 3B
AliasesPRC17; TBC1D3I; TBC1D3L
GeneCards (Weizmann)TBC1D3B
Ensembl hg19 (Hinxton)ENSG00000274808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274808 [Gene_View]  ENSG00000274808 [Sequence]  chr17:36165681-36176624 [Contig_View]  TBC1D3B [Vega]
ICGC DataPortalENSG00000274808
TCGA cBioPortalTBC1D3B
AceView (NCBI)TBC1D3B
Genatlas (Paris)TBC1D3B
SOURCE (Princeton)TBC1D3B
Genetics Home Reference (NIH)TBC1D3B
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3B  -     chr17:36165681-36176624 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3B  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathTBC1D3B - 17q12 [CytoView hg19]  TBC1D3B - 17q12 [CytoView hg38]
ImmunoBaseENSG00000274808
Genome Data Viewer NCBITBC1D3B [Mapview hg19]  
OMIM610144   
Gene and transcription
Genbank (Entrez)AF540953 AK292257
RefSeq transcript (Entrez)NM_001001417
Consensus coding sequences : CCDS (NCBI)TBC1D3B
Gene ExpressionTBC1D3B [ NCBI-GEO ]   TBC1D3B [ EBI - ARRAY_EXPRESS ]   TBC1D3B [ SEEK ]   TBC1D3B [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3B [ Firebrowse - Broad ]
GenevisibleExpression of TBC1D3B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414059
GTEX Portal (Tissue expression)TBC1D3B
Human Protein AtlasENSG00000274808-TBC1D3B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDS4
PhosPhoSitePlusA6NDS4
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom    Rab-GTPase_TBC_sf   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3B
SuperfamilyA6NDS4
AlphaFold pdb e-kbA6NDS4   
Human Protein Atlas [tissue]ENSG00000274808-TBC1D3B [tissue]
HPRD11264
Protein Interaction databases
DIP (DOE-UCLA)A6NDS4
IntAct (EBI)A6NDS4
BioGRIDTBC1D3B
STRING (EMBL)TBC1D3B
ZODIACTBC1D3B
Ontologies - Pathways
QuickGOA6NDS4
Ontology : AmiGOGTPase activator activity  plasma membrane  intracellular protein transport  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  plasma membrane  intracellular protein transport  activation of GTPase activity  
NDEx NetworkTBC1D3B
Atlas of Cancer Signalling NetworkTBC1D3B
Wikipedia pathwaysTBC1D3B
Orthology - Evolution
OrthoDB414059
GeneTree (enSembl)ENSG00000274808
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3B
Homologs : HomoloGeneTBC1D3B
Homology/Alignments : Family Browser (UCSC)TBC1D3B
Gene fusions - Rearrangements
Fusion : QuiverTBC1D3B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3B
dbVarTBC1D3B
ClinVarTBC1D3B
MonarchTBC1D3B
1000_GenomesTBC1D3B 
Exome Variant ServerTBC1D3B
GNOMAD BrowserENSG00000274808
Varsome BrowserTBC1D3B
ACMGTBC1D3B variants
VarityA6NDS4
Genomic Variants (DGV)TBC1D3B [DGVbeta]
DECIPHERTBC1D3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3B 
Mutations
ICGC Data PortalTBC1D3B 
TCGA Data PortalTBC1D3B 
Broad Tumor PortalTBC1D3B
OASIS PortalTBC1D3B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBC1D3B
DgiDB (Drug Gene Interaction Database)TBC1D3B
DoCM (Curated mutations)TBC1D3B
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3B
Cancer3DTBC1D3B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610144   
Orphanet
DisGeNETTBC1D3B
MedgenTBC1D3B
Genetic Testing Registry TBC1D3B
NextProtA6NDS4 [Medical]
GENETestsTBC1D3B
Target ValidationTBC1D3B
Huge Navigator TBC1D3B [HugePedia]
ClinGenTBC1D3B
Clinical trials, drugs, therapy
MyCancerGenomeTBC1D3B
Protein Interactions : CTDTBC1D3B
Pharm GKB GenePA142670833
PharosA6NDS4
Clinical trialTBC1D3B
Miscellaneous
canSAR (ICR)TBC1D3B
HarmonizomeTBC1D3B
DataMed IndexTBC1D3B
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBC1D3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:24 CEST 2021

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