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TBC1D3C (TBC1 domain family member 3C)

Identity

Alias_namesTBC1 domain family
Alias_symbol (synonym)MGC44903
Other aliasTBC1D3D
HGNC (Hugo) TBC1D3C
LocusID (NCBI) 414060
Atlas_Id 43900
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36283977 and ends at 36294915 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D3C   24889
Cards
Entrez_Gene (NCBI)TBC1D3C  414060  TBC1 domain family member 3C
AliasesTBC1D3D
GeneCards (Weizmann)TBC1D3C
Ensembl hg19 (Hinxton)ENSG00000278299 [Gene_View]  chr17:36283977-36294915 [Contig_View]  TBC1D3C [Vega]
Ensembl hg38 (Hinxton)ENSG00000278299 [Gene_View]  chr17:36283977-36294915 [Contig_View]  TBC1D3C [Vega]
ICGC DataPortalENSG00000278299
TCGA cBioPortalTBC1D3C
AceView (NCBI)TBC1D3C
Genatlas (Paris)TBC1D3C
WikiGenes414060
SOURCE (Princeton)TBC1D3C
Genetics Home Reference (NIH)TBC1D3C
Genomic and cartography
GoldenPath hg19 (UCSC)TBC1D3C  -     chr17:36283977-36294915 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TBC1D3C  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblTBC1D3C - 17q12 [CytoView hg19]  TBC1D3C - 17q12 [CytoView hg38]
Mapping of homologs : NCBITBC1D3C [Mapview hg19]  TBC1D3C [Mapview hg38]
OMIM610806   
Gene and transcription
Genbank (Entrez)AA045947 AK313329
RefSeq transcript (Entrez)NM_001001418
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187661 NW_004929407
Consensus coding sequences : CCDS (NCBI)TBC1D3C
Cluster EST : UnigeneHs.743999 [ NCBI ]
CGAP (NCI)Hs.743999
Alternative Splicing GalleryENSG00000278299
Gene ExpressionTBC1D3C [ NCBI-GEO ]   TBC1D3C [ EBI - ARRAY_EXPRESS ]   TBC1D3C [ SEEK ]   TBC1D3C [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414060
GTEX Portal (Tissue expression)TBC1D3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPX1
Splice isoforms : SwissVarQ6IPX1
PhosPhoSitePlusQ6IPX1
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3C
DMDM Disease mutations414060
Blocks (Seattle)TBC1D3C
SuperfamilyQ6IPX1
Human Protein AtlasENSG00000278299
Peptide AtlasQ6IPX1
HPRD17559
IPIIPI00735340   IPI00964529   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPX1
IntAct (EBI)Q6IPX1
FunCoupENSG00000278299
BioGRIDTBC1D3C
STRING (EMBL)TBC1D3C
ZODIACTBC1D3C
Ontologies - Pathways
QuickGOQ6IPX1
Ontology : AmiGOGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D3C
Atlas of Cancer Signalling NetworkTBC1D3C
Wikipedia pathwaysTBC1D3C
Orthology - Evolution
OrthoDB414060
GeneTree (enSembl)ENSG00000278299
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3C
HOVERGENQ6IPX1
HOGENOMQ6IPX1
Homologs : HomoloGeneTBC1D3C
Homology/Alignments : Family Browser (UCSC)TBC1D3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3C
dbVarTBC1D3C
ClinVarTBC1D3C
1000_GenomesTBC1D3C 
Exome Variant ServerTBC1D3C
ExAC (Exome Aggregation Consortium)TBC1D3C (select the gene name)
Genetic variants : HAPMAP414060
Genomic Variants (DGV)TBC1D3C [DGVbeta]
DECIPHER (Syndromes)17:36283977-36294915  ENSG00000278299
CONAN: Copy Number AnalysisTBC1D3C 
Mutations
ICGC Data PortalTBC1D3C 
TCGA Data PortalTBC1D3C 
Broad Tumor PortalTBC1D3C
OASIS PortalTBC1D3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D3C
DgiDB (Drug Gene Interaction Database)TBC1D3C
DoCM (Curated mutations)TBC1D3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3C (select a term)
intoGenTBC1D3C
Cancer3DTBC1D3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610806   
Orphanet
MedgenTBC1D3C
Genetic Testing Registry TBC1D3C
NextProtQ6IPX1 [Medical]
TSGene414060
GENETestsTBC1D3C
Huge Navigator TBC1D3C [HugePedia]
snp3D : Map Gene to Disease414060
BioCentury BCIQTBC1D3C
ClinGenTBC1D3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414060
Chemical/Pharm GKB GenePA142670834
Clinical trialTBC1D3C
Miscellaneous
canSAR (ICR)TBC1D3C (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D3C
EVEXTBC1D3C
GoPubMedTBC1D3C
iHOPTBC1D3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:26 CET 2017

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