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TBC1D3D (TBC1 domain family member 3D)

Identity

Other aliasPRC17
TBC1D3
TBC1D3A
TBC1D3H
HGNC (Hugo) TBC1D3D
LocusID (NCBI) 101060389
Atlas_Id 56866
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36165681 and ends at 36176578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D3D   28944
Cards
Entrez_Gene (NCBI)TBC1D3D  101060389  TBC1 domain family member 3D
AliasesPRC17; TBC1D3; TBC1D3A; TBC1D3H
GeneCards (Weizmann)TBC1D3D
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:36165681-36176578 [Contig_View]  TBC1D3D [Vega]
TCGA cBioPortalTBC1D3D
AceView (NCBI)TBC1D3D
Genatlas (Paris)TBC1D3D
WikiGenes101060389
SOURCE (Princeton)TBC1D3D
Genetics Home Reference (NIH)TBC1D3D
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3D  -     chr17:36165681-36176578 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3D  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblTBC1D3D - 17q12 [CytoView hg19]  TBC1D3D - 17q12 [CytoView hg38]
Mapping of homologs : NCBITBC1D3D [Mapview hg19]  TBC1D3D [Mapview hg38]
OMIM610807   
Gene and transcription
Genbank (Entrez)BI088323
RefSeq transcript (Entrez)NM_001123390 NM_001291465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D3D
Cluster EST : UnigeneHs.454716 [ NCBI ]
CGAP (NCI)Hs.454716
Gene ExpressionTBC1D3D [ NCBI-GEO ]   TBC1D3D [ EBI - ARRAY_EXPRESS ]   TBC1D3D [ SEEK ]   TBC1D3D [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101060389
GTEX Portal (Tissue expression)TBC1D3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087WVF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087WVF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087WVF3
Splice isoforms : SwissVarA0A087WVF3
PhosPhoSitePlusA0A087WVF3
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3D
DMDM Disease mutations101060389
Blocks (Seattle)TBC1D3D
SuperfamilyA0A087WVF3
Peptide AtlasA0A087WVF3
Protein Interaction databases
DIP (DOE-UCLA)A0A087WVF3
IntAct (EBI)A0A087WVF3
BioGRIDTBC1D3D
STRING (EMBL)TBC1D3D
ZODIACTBC1D3D
Ontologies - Pathways
QuickGOA0A087WVF3
Ontology : AmiGOGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D3D
Atlas of Cancer Signalling NetworkTBC1D3D
Wikipedia pathwaysTBC1D3D
Orthology - Evolution
OrthoDB101060389
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3D
HOVERGENA0A087WVF3
HOGENOMA0A087WVF3
Homologs : HomoloGeneTBC1D3D
Homology/Alignments : Family Browser (UCSC)TBC1D3D
Gene fusions - Rearrangements
Tumor Fusion PortalTBC1D3D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3D
dbVarTBC1D3D
ClinVarTBC1D3D
1000_GenomesTBC1D3D 
Exome Variant ServerTBC1D3D
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP101060389
Genomic Variants (DGV)TBC1D3D [DGVbeta]
DECIPHERTBC1D3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3D 
Mutations
ICGC Data PortalTBC1D3D 
TCGA Data PortalTBC1D3D 
Broad Tumor PortalTBC1D3D
OASIS PortalTBC1D3D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3D
BioMutasearch TBC1D3D
DgiDB (Drug Gene Interaction Database)TBC1D3D
DoCM (Curated mutations)TBC1D3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3D (select a term)
intoGenTBC1D3D
Cancer3DTBC1D3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610807   
Orphanet
DisGeNETTBC1D3D
MedgenTBC1D3D
Genetic Testing Registry TBC1D3D
NextProtA0A087WVF3 [Medical]
TSGene101060389
GENETestsTBC1D3D
Target ValidationTBC1D3D
Huge Navigator TBC1D3D [HugePedia]
snp3D : Map Gene to Disease101060389
BioCentury BCIQTBC1D3D
ClinGenTBC1D3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060389
Chemical/Pharm GKB GenePA166123741
Clinical trialTBC1D3D
Miscellaneous
canSAR (ICR)TBC1D3D (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D3D
EVEXTBC1D3D
GoPubMedTBC1D3D
iHOPTBC1D3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:37:47 CET 2017

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