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TBC1D3E (TBC1 domain family member 3E)

Identity

Other aliasTBC1DE3
HGNC (Hugo) TBC1D3E
LocusID (NCBI) 102723859
Atlas_Id 56764
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 38127970 and ends at 38138868 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D3E   27071
Cards
Entrez_Gene (NCBI)TBC1D3E  102723859  TBC1 domain family member 3E
AliasesTBC1DE3
GeneCards (Weizmann)TBC1D3E
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:38127970-38138868 [Contig_View]  TBC1D3E [Vega]
TCGA cBioPortalTBC1D3E
AceView (NCBI)TBC1D3E
Genatlas (Paris)TBC1D3E
WikiGenes102723859
SOURCE (Princeton)TBC1D3E
Genetics Home Reference (NIH)TBC1D3E
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3E  -     chr17:38127970-38138868 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3E  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblTBC1D3E - 17q12 [CytoView hg19]  TBC1D3E - 17q12 [CytoView hg38]
Mapping of homologs : NCBITBC1D3E [Mapview hg19]  TBC1D3E [Mapview hg38]
OMIM610808   
Gene and transcription
Genbank (Entrez)AL136860 BC047739
RefSeq transcript (Entrez)NM_001291466
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)TBC1D3E
Cluster EST : UnigeneHs.735975 [ NCBI ]
CGAP (NCI)Hs.735975
Gene ExpressionTBC1D3E [ NCBI-GEO ]   TBC1D3E [ EBI - ARRAY_EXPRESS ]   TBC1D3E [ SEEK ]   TBC1D3E [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102723859
GTEX Portal (Tissue expression)TBC1D3E
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087X179   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087X179  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087X179
Splice isoforms : SwissVarA0A087X179
PhosPhoSitePlusA0A087X179
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3E
DMDM Disease mutations102723859
Blocks (Seattle)TBC1D3E
SuperfamilyA0A087X179
Peptide AtlasA0A087X179
Protein Interaction databases
DIP (DOE-UCLA)A0A087X179
IntAct (EBI)A0A087X179
BioGRIDTBC1D3E
STRING (EMBL)TBC1D3E
ZODIACTBC1D3E
Ontologies - Pathways
QuickGOA0A087X179
Ontology : AmiGOGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D3E
Atlas of Cancer Signalling NetworkTBC1D3E
Wikipedia pathwaysTBC1D3E
Orthology - Evolution
OrthoDB102723859
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3E
HOVERGENA0A087X179
HOGENOMA0A087X179
Homologs : HomoloGeneTBC1D3E
Homology/Alignments : Family Browser (UCSC)TBC1D3E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3E
dbVarTBC1D3E
ClinVarTBC1D3E
1000_GenomesTBC1D3E 
Exome Variant ServerTBC1D3E
ExAC (Exome Aggregation Consortium)TBC1D3E (select the gene name)
Genetic variants : HAPMAP102723859
Genomic Variants (DGV)TBC1D3E [DGVbeta]
DECIPHERTBC1D3E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3E 
Mutations
ICGC Data PortalTBC1D3E 
TCGA Data PortalTBC1D3E 
Broad Tumor PortalTBC1D3E
OASIS PortalTBC1D3E [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3E
BioMutasearch TBC1D3E
DgiDB (Drug Gene Interaction Database)TBC1D3E
DoCM (Curated mutations)TBC1D3E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3E (select a term)
intoGenTBC1D3E
Cancer3DTBC1D3E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610808   
Orphanet
MedgenTBC1D3E
Genetic Testing Registry TBC1D3E
NextProtA0A087X179 [Medical]
TSGene102723859
GENETestsTBC1D3E
Target ValidationTBC1D3E
Huge Navigator TBC1D3E [HugePedia]
snp3D : Map Gene to Disease102723859
BioCentury BCIQTBC1D3E
ClinGenTBC1D3E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723859
Chemical/Pharm GKB GenePA166123742
Clinical trialTBC1D3E
Miscellaneous
canSAR (ICR)TBC1D3E (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D3E
EVEXTBC1D3E
GoPubMedTBC1D3E
iHOPTBC1D3E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:42 CEST 2017

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