Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TBC1D3F (TBC1 domain family member 3F)

Identity

Alias_namesTBC1 domain family
Other aliasTBC1D3
HGNC (Hugo) TBC1D3F
LocusID (NCBI) 84218
Atlas_Id 50882
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36428612 and ends at 36439523 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D3F   18257
Cards
Entrez_Gene (NCBI)TBC1D3F  84218  TBC1 domain family member 3F
AliasesTBC1D3
GeneCards (Weizmann)TBC1D3F
Ensembl hg19 (Hinxton)ENSG00000275954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275954 [Gene_View]  chr17:36428612-36439523 [Contig_View]  TBC1D3F [Vega]
ICGC DataPortalENSG00000275954
TCGA cBioPortalTBC1D3F
AceView (NCBI)TBC1D3F
Genatlas (Paris)TBC1D3F
WikiGenes84218
SOURCE (Princeton)TBC1D3F
Genetics Home Reference (NIH)TBC1D3F
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3F  -     chr17:36428612-36439523 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3F  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblTBC1D3F - 17q12 [CytoView hg19]  TBC1D3F - 17q12 [CytoView hg38]
Mapping of homologs : NCBITBC1D3F [Mapview hg19]  TBC1D3F [Mapview hg38]
OMIM610809   
Gene and transcription
Genbank (Entrez)AK225985 AK292344 AM392796 AM393734 BC075809
RefSeq transcript (Entrez)NM_032258
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)TBC1D3F
Cluster EST : UnigeneHs.617010 [ NCBI ]
CGAP (NCI)Hs.617010
Alternative Splicing GalleryENSG00000275954
Gene ExpressionTBC1D3F [ NCBI-GEO ]   TBC1D3F [ EBI - ARRAY_EXPRESS ]   TBC1D3F [ SEEK ]   TBC1D3F [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84218
GTEX Portal (Tissue expression)TBC1D3F
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NER0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NER0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NER0
Splice isoforms : SwissVarA6NER0
PhosPhoSitePlusA6NER0
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3F
DMDM Disease mutations84218
Blocks (Seattle)TBC1D3F
SuperfamilyA6NER0
Human Protein AtlasENSG00000275954
Peptide AtlasA6NER0
HPRD09667
Protein Interaction databases
DIP (DOE-UCLA)A6NER0
IntAct (EBI)A6NER0
FunCoupENSG00000275954
BioGRIDTBC1D3F
STRING (EMBL)TBC1D3F
ZODIACTBC1D3F
Ontologies - Pathways
QuickGOA6NER0
Ontology : AmiGOGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D3F
Atlas of Cancer Signalling NetworkTBC1D3F
Wikipedia pathwaysTBC1D3F
Orthology - Evolution
OrthoDB84218
GeneTree (enSembl)ENSG00000275954
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3F
HOVERGENA6NER0
HOGENOMA6NER0
Homologs : HomoloGeneTBC1D3F
Homology/Alignments : Family Browser (UCSC)TBC1D3F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3F
dbVarTBC1D3F
ClinVarTBC1D3F
1000_GenomesTBC1D3F 
Exome Variant ServerTBC1D3F
ExAC (Exome Aggregation Consortium)TBC1D3F (select the gene name)
Genetic variants : HAPMAP84218
Genomic Variants (DGV)TBC1D3F [DGVbeta]
DECIPHERTBC1D3F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3F 
Mutations
ICGC Data PortalTBC1D3F 
TCGA Data PortalTBC1D3F 
Broad Tumor PortalTBC1D3F
OASIS PortalTBC1D3F [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D3F
DgiDB (Drug Gene Interaction Database)TBC1D3F
DoCM (Curated mutations)TBC1D3F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3F (select a term)
intoGenTBC1D3F
Cancer3DTBC1D3F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610809   
Orphanet
MedgenTBC1D3F
Genetic Testing Registry TBC1D3F
NextProtA6NER0 [Medical]
TSGene84218
GENETestsTBC1D3F
Target ValidationTBC1D3F
Huge Navigator TBC1D3F [HugePedia]
snp3D : Map Gene to Disease84218
BioCentury BCIQTBC1D3F
ClinGenTBC1D3F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84218
Chemical/Pharm GKB GenePA145007592
Clinical trialTBC1D3F
Miscellaneous
canSAR (ICR)TBC1D3F (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D3F
EVEXTBC1D3F
GoPubMedTBC1D3F
iHOPTBC1D3F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:58:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.