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TBC1D3I (TBC1 domain family member 3I)

Identity

Other alias-
HGNC (Hugo) TBC1D3I
LocusID (NCBI) 102724862
Atlas_Id 56730
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36165681 and ends at 36176578 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D3I   32709
Cards
Entrez_Gene (NCBI)TBC1D3I  102724862  TBC1 domain family member 3I
Aliases
GeneCards (Weizmann)TBC1D3I
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:36165681-36176578 [Contig_View]  TBC1D3I [Vega]
TCGA cBioPortalTBC1D3I
AceView (NCBI)TBC1D3I
Genatlas (Paris)TBC1D3I
WikiGenes102724862
SOURCE (Princeton)TBC1D3I
Genetics Home Reference (NIH)TBC1D3I
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3I  -     chr17:36165681-36176578 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3I  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblTBC1D3I - 17q12 [CytoView hg19]  TBC1D3I - 17q12 [CytoView hg38]
Mapping of homologs : NCBITBC1D3I [Mapview hg19]  TBC1D3I [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC078140
RefSeq transcript (Entrez)NM_001291463
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614 NT_187661
Consensus coding sequences : CCDS (NCBI)TBC1D3I
Cluster EST : UnigeneHs.454716 [ NCBI ]
CGAP (NCI)Hs.454716
Gene ExpressionTBC1D3I [ NCBI-GEO ]   TBC1D3I [ EBI - ARRAY_EXPRESS ]   TBC1D3I [ SEEK ]   TBC1D3I [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3I [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724862
GTEX Portal (Tissue expression)TBC1D3I
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087WXS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087WXS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087WXS9
Splice isoforms : SwissVarA0A087WXS9
PhosPhoSitePlusA0A087WXS9
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3I
DMDM Disease mutations102724862
Blocks (Seattle)TBC1D3I
SuperfamilyA0A087WXS9
Peptide AtlasA0A087WXS9
Protein Interaction databases
DIP (DOE-UCLA)A0A087WXS9
IntAct (EBI)A0A087WXS9
BioGRIDTBC1D3I
STRING (EMBL)TBC1D3I
ZODIACTBC1D3I
Ontologies - Pathways
QuickGOA0A087WXS9
Ontology : AmiGOGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D3I
Atlas of Cancer Signalling NetworkTBC1D3I
Wikipedia pathwaysTBC1D3I
Orthology - Evolution
OrthoDB102724862
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3I
HOVERGENA0A087WXS9
HOGENOMA0A087WXS9
Homologs : HomoloGeneTBC1D3I
Homology/Alignments : Family Browser (UCSC)TBC1D3I
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3I [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3I
dbVarTBC1D3I
ClinVarTBC1D3I
1000_GenomesTBC1D3I 
Exome Variant ServerTBC1D3I
ExAC (Exome Aggregation Consortium)TBC1D3I (select the gene name)
Genetic variants : HAPMAP102724862
Genomic Variants (DGV)TBC1D3I [DGVbeta]
DECIPHERTBC1D3I [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3I 
Mutations
ICGC Data PortalTBC1D3I 
TCGA Data PortalTBC1D3I 
Broad Tumor PortalTBC1D3I
OASIS PortalTBC1D3I [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3I
BioMutasearch TBC1D3I
DgiDB (Drug Gene Interaction Database)TBC1D3I
DoCM (Curated mutations)TBC1D3I (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3I (select a term)
intoGenTBC1D3I
Cancer3DTBC1D3I(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTBC1D3I
Genetic Testing Registry TBC1D3I
NextProtA0A087WXS9 [Medical]
TSGene102724862
GENETestsTBC1D3I
Huge Navigator TBC1D3I [HugePedia]
snp3D : Map Gene to Disease102724862
BioCentury BCIQTBC1D3I
ClinGenTBC1D3I
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724862
Clinical trialTBC1D3I
Miscellaneous
canSAR (ICR)TBC1D3I (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D3I
EVEXTBC1D3I
GoPubMedTBC1D3I
iHOPTBC1D3I
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:22 CEST 2017

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