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TBC1D3I (TBC1 domain family member 3I)

Identity

Alias (NCBI)PRC17
TBC1D3
TBC1D3A
HGNC (Hugo) TBC1D3I
HGNC Previous nameTBC1 domain family, member 3I
LocusID (NCBI) 102724862
Atlas_Id 56730
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36165681 and ends at 36176578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBC1D3I   32709
Cards
Entrez_Gene (NCBI)TBC1D3I    TBC1 domain family member 3I
AliasesPRC17; TBC1D3; TBC1D3A
GeneCards (Weizmann)TBC1D3I
Ensembl hg19 (Hinxton)ENSG00000274933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274933 [Gene_View]  ENSG00000274933 [Sequence]  chr17:36165681-36176578 [Contig_View]  TBC1D3I [Vega]
ICGC DataPortalENSG00000274933
TCGA cBioPortalTBC1D3I
AceView (NCBI)TBC1D3I
Genatlas (Paris)TBC1D3I
SOURCE (Princeton)TBC1D3I
Genetics Home Reference (NIH)TBC1D3I
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3I  -     chr17:36165681-36176578 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3I  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathTBC1D3I - 17q12 [CytoView hg19]  TBC1D3I - 17q12 [CytoView hg38]
ImmunoBaseENSG00000274933
Genome Data Viewer NCBITBC1D3I [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC078140
RefSeq transcript (Entrez)NM_001291463
Consensus coding sequences : CCDS (NCBI)TBC1D3I
Gene ExpressionTBC1D3I [ NCBI-GEO ]   TBC1D3I [ EBI - ARRAY_EXPRESS ]   TBC1D3I [ SEEK ]   TBC1D3I [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3I [ Firebrowse - Broad ]
GenevisibleExpression of TBC1D3I in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724862
GTEX Portal (Tissue expression)TBC1D3I
Human Protein AtlasENSG00000274933-TBC1D3I [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087WXS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087WXS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087WXS9
PhosPhoSitePlusA0A087WXS9
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom    Rab-GTPase_TBC_sf   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3I
SuperfamilyA0A087WXS9
AlphaFold pdb e-kbA0A087WXS9   
Human Protein Atlas [tissue]ENSG00000274933-TBC1D3I [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A0A087WXS9
IntAct (EBI)A0A087WXS9
BioGRIDTBC1D3I
STRING (EMBL)TBC1D3I
ZODIACTBC1D3I
Ontologies - Pathways
QuickGOA0A087WXS9
Ontology : AmiGOGTPase activator activity  plasma membrane  intracellular protein transport  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  plasma membrane  intracellular protein transport  activation of GTPase activity  
NDEx NetworkTBC1D3I
Atlas of Cancer Signalling NetworkTBC1D3I
Wikipedia pathwaysTBC1D3I
Orthology - Evolution
OrthoDB102724862
GeneTree (enSembl)ENSG00000274933
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3I
Homologs : HomoloGeneTBC1D3I
Homology/Alignments : Family Browser (UCSC)TBC1D3I
Gene fusions - Rearrangements
Fusion : QuiverTBC1D3I
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3I [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3I
dbVarTBC1D3I
ClinVarTBC1D3I
MonarchTBC1D3I
1000_GenomesTBC1D3I 
Exome Variant ServerTBC1D3I
GNOMAD BrowserENSG00000274933
Varsome BrowserTBC1D3I
ACMGTBC1D3I variants
VarityA0A087WXS9
Genomic Variants (DGV)TBC1D3I [DGVbeta]
DECIPHERTBC1D3I [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3I 
Mutations
ICGC Data PortalTBC1D3I 
TCGA Data PortalTBC1D3I 
Broad Tumor PortalTBC1D3I
OASIS PortalTBC1D3I [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3I
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBC1D3I
DgiDB (Drug Gene Interaction Database)TBC1D3I
DoCM (Curated mutations)TBC1D3I
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3I
Cancer3DTBC1D3I
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTBC1D3I
MedgenTBC1D3I
Genetic Testing Registry TBC1D3I
NextProtA0A087WXS9 [Medical]
GENETestsTBC1D3I
Target ValidationTBC1D3I
Huge Navigator TBC1D3I [HugePedia]
ClinGenTBC1D3I
Clinical trials, drugs, therapy
MyCancerGenomeTBC1D3I
Protein Interactions : CTDTBC1D3I
Pharm GKB GenePA166181661
PharosA0A087WXS9
Clinical trialTBC1D3I
Miscellaneous
canSAR (ICR)TBC1D3I
HarmonizomeTBC1D3I
DataMed IndexTBC1D3I
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBC1D3I
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:25 CEST 2021

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