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TBC1D3K (TBC1 domain family member 3K)

Identity

Other alias-
HGNC (Hugo) TBC1D3K
LocusID (NCBI) 101060351
Atlas_Id 56869
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36377531 and ends at 36439509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D3K   51245
Cards
Entrez_Gene (NCBI)TBC1D3K  101060351  TBC1 domain family member 3K
Aliases
GeneCards (Weizmann)TBC1D3K
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:36377531-36439509 [Contig_View]  TBC1D3K [Vega]
TCGA cBioPortalTBC1D3K
AceView (NCBI)TBC1D3K
Genatlas (Paris)TBC1D3K
WikiGenes101060351
SOURCE (Princeton)TBC1D3K
Genetics Home Reference (NIH)TBC1D3K
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D3K  -     chr17:36377531-36439509 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D3K  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblTBC1D3K - 17q12 [CytoView hg19]  TBC1D3K - 17q12 [CytoView hg38]
Mapping of homologs : NCBITBC1D3K [Mapview hg19]  TBC1D3K [Mapview hg38]
Gene and transcription
Genbank (Entrez)DC397859
RefSeq transcript (Entrez)NM_001291464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D3K
Cluster EST : UnigeneHs.454716 [ NCBI ]
CGAP (NCI)Hs.454716
Gene ExpressionTBC1D3K [ NCBI-GEO ]   TBC1D3K [ EBI - ARRAY_EXPRESS ]   TBC1D3K [ SEEK ]   TBC1D3K [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D3K [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101060351
GTEX Portal (Tissue expression)TBC1D3K
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087X1G2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087X1G2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087X1G2
Splice isoforms : SwissVarA0A087X1G2
PhosPhoSitePlusA0A087X1G2
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)TBC1D3K
DMDM Disease mutations101060351
Blocks (Seattle)TBC1D3K
SuperfamilyA0A087X1G2
Peptide AtlasA0A087X1G2
Protein Interaction databases
DIP (DOE-UCLA)A0A087X1G2
IntAct (EBI)A0A087X1G2
BioGRIDTBC1D3K
STRING (EMBL)TBC1D3K
ZODIACTBC1D3K
Ontologies - Pathways
QuickGOA0A087X1G2
Ontology : AmiGOGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  plasma membrane  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D3K
Atlas of Cancer Signalling NetworkTBC1D3K
Wikipedia pathwaysTBC1D3K
Orthology - Evolution
OrthoDB101060351
Phylogenetic Trees/Animal Genes : TreeFamTBC1D3K
HOVERGENA0A087X1G2
HOGENOMA0A087X1G2
Homologs : HomoloGeneTBC1D3K
Homology/Alignments : Family Browser (UCSC)TBC1D3K
Gene fusions - Rearrangements
Tumor Fusion PortalTBC1D3K
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D3K [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D3K
dbVarTBC1D3K
ClinVarTBC1D3K
1000_GenomesTBC1D3K 
Exome Variant ServerTBC1D3K
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP101060351
Genomic Variants (DGV)TBC1D3K [DGVbeta]
DECIPHERTBC1D3K [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D3K 
Mutations
ICGC Data PortalTBC1D3K 
TCGA Data PortalTBC1D3K 
Broad Tumor PortalTBC1D3K
OASIS PortalTBC1D3K [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTBC1D3K
BioMutasearch TBC1D3K
DgiDB (Drug Gene Interaction Database)TBC1D3K
DoCM (Curated mutations)TBC1D3K (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D3K (select a term)
intoGenTBC1D3K
Cancer3DTBC1D3K(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTBC1D3K
MedgenTBC1D3K
Genetic Testing Registry TBC1D3K
NextProtA0A087X1G2 [Medical]
TSGene101060351
GENETestsTBC1D3K
Target ValidationTBC1D3K
Huge Navigator TBC1D3K [HugePedia]
snp3D : Map Gene to Disease101060351
BioCentury BCIQTBC1D3K
ClinGenTBC1D3K
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060351
Chemical/Pharm GKB GenePA166123744
Clinical trialTBC1D3K
Miscellaneous
canSAR (ICR)TBC1D3K (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D3K
EVEXTBC1D3K
GoPubMedTBC1D3K
iHOPTBC1D3K
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:37:48 CET 2017

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