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TBC1D9 (TBC1 domain family member 9)

Identity

Alias (NCBI)GRAMD9
MDR1
HGNC (Hugo) TBC1D9
HGNC Alias symbKIAA0882
MDR1
GRAMD9
HGNC Previous nameTBC1 domain family, member 9 (with GRAM domain)
LocusID (NCBI) 23158
Atlas_Id 56244
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 140620782 and ends at 140756385 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TBC1D9 (4q31.21) / CORO1C (12q24.11)TBC1D9 (4q31.21) / SMARCA5 (4q31.21)TBC1D9 (4q31.21) / TBC1D9 (4q31.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBC1D9   21710
Cards
Entrez_Gene (NCBI)TBC1D9    TBC1 domain family member 9
AliasesGRAMD9; MDR1
GeneCards (Weizmann)TBC1D9
Ensembl hg19 (Hinxton)ENSG00000109436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109436 [Gene_View]  ENSG00000109436 [Sequence]  chr4:140620782-140756385 [Contig_View]  TBC1D9 [Vega]
ICGC DataPortalENSG00000109436
TCGA cBioPortalTBC1D9
AceView (NCBI)TBC1D9
Genatlas (Paris)TBC1D9
SOURCE (Princeton)TBC1D9
Genetics Home Reference (NIH)TBC1D9
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D9  -     chr4:140620782-140756385 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D9  -     4q31.21   [Description]    (hg19-Feb_2009)
GoldenPathTBC1D9 - 4q31.21 [CytoView hg19]  TBC1D9 - 4q31.21 [CytoView hg38]
ImmunoBaseENSG00000109436
Genome Data Viewer NCBITBC1D9 [Mapview hg19]  
OMIM618035   
Gene and transcription
Genbank (Entrez)AB020689 AB449892 AF131785 AI439646 AK127020
RefSeq transcript (Entrez)NM_015130
Consensus coding sequences : CCDS (NCBI)TBC1D9
Gene ExpressionTBC1D9 [ NCBI-GEO ]   TBC1D9 [ EBI - ARRAY_EXPRESS ]   TBC1D9 [ SEEK ]   TBC1D9 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D9 [ Firebrowse - Broad ]
GenevisibleExpression of TBC1D9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23158
GTEX Portal (Tissue expression)TBC1D9
Human Protein AtlasENSG00000109436-TBC1D9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZT07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZT07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZT07
PhosPhoSitePlusQ6ZT07
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)    TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom    GRAM    PH-like_dom_sf    Rab-GTPase-TBC_dom    Rab-GTPase_TBC_sf    TCB1D9/TCB1D9B_PH-GRAM1    TCB1D9/TCB1D9B_PH-GRAM2   
Domain families : Pfam (Sanger)GRAM (PF02893)    RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam02893    pfam00566   
Domain families : Smart (EMBL)GRAM (SM00568)  TBC (SM00164)  
Conserved Domain (NCBI)TBC1D9
SuperfamilyQ6ZT07
AlphaFold pdb e-kbQ6ZT07   
Human Protein Atlas [tissue]ENSG00000109436-TBC1D9 [tissue]
HPRD11115
Protein Interaction databases
DIP (DOE-UCLA)Q6ZT07
IntAct (EBI)Q6ZT07
BioGRIDTBC1D9
STRING (EMBL)TBC1D9
ZODIACTBC1D9
Ontologies - Pathways
QuickGOQ6ZT07
Ontology : AmiGOGTPase activator activity  calcium ion binding  protein binding  intracellular protein transport  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  calcium ion binding  protein binding  intracellular protein transport  activation of GTPase activity  
NDEx NetworkTBC1D9
Atlas of Cancer Signalling NetworkTBC1D9
Wikipedia pathwaysTBC1D9
Orthology - Evolution
OrthoDB23158
GeneTree (enSembl)ENSG00000109436
Phylogenetic Trees/Animal Genes : TreeFamTBC1D9
Homologs : HomoloGeneTBC1D9
Homology/Alignments : Family Browser (UCSC)TBC1D9
Gene fusions - Rearrangements
Fusion : QuiverTBC1D9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D9
dbVarTBC1D9
ClinVarTBC1D9
MonarchTBC1D9
1000_GenomesTBC1D9 
Exome Variant ServerTBC1D9
GNOMAD BrowserENSG00000109436
Varsome BrowserTBC1D9
ACMGTBC1D9 variants
VarityQ6ZT07
Genomic Variants (DGV)TBC1D9 [DGVbeta]
DECIPHERTBC1D9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D9 
Mutations
ICGC Data PortalTBC1D9 
TCGA Data PortalTBC1D9 
Broad Tumor PortalTBC1D9
OASIS PortalTBC1D9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBC1D9
Mutations and Diseases : HGMDTBC1D9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBC1D9
DgiDB (Drug Gene Interaction Database)TBC1D9
DoCM (Curated mutations)TBC1D9
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D9
Cancer3DTBC1D9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618035   
Orphanet
DisGeNETTBC1D9
MedgenTBC1D9
Genetic Testing Registry TBC1D9
NextProtQ6ZT07 [Medical]
GENETestsTBC1D9
Target ValidationTBC1D9
Huge Navigator TBC1D9 [HugePedia]
ClinGenTBC1D9
Clinical trials, drugs, therapy
MyCancerGenomeTBC1D9
Protein Interactions : CTDTBC1D9
Pharm GKB GenePA128394607
PharosQ6ZT07
Clinical trialTBC1D9
Miscellaneous
canSAR (ICR)TBC1D9
HarmonizomeTBC1D9
DataMed IndexTBC1D9
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBC1D9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:27 CEST 2021

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