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TBC1D9 (TBC1 domain family member 9)

Identity

Alias_namesTBC1 domain family
Alias_symbol (synonym)KIAA0882
MDR1
GRAMD9
Other alias
HGNC (Hugo) TBC1D9
LocusID (NCBI) 23158
Atlas_Id 56244
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 140620782 and ends at 140756317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TBC1D9 (4q31.21) / CORO1C (12q24.11)TBC1D9 (4q31.21) / SMARCA5 (4q31.21)TBC1D9 (4q31.21) / TBC1D9 (4q31.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBC1D9   21710
Cards
Entrez_Gene (NCBI)TBC1D9  23158  TBC1 domain family member 9
AliasesGRAMD9; MDR1
GeneCards (Weizmann)TBC1D9
Ensembl hg19 (Hinxton)ENSG00000109436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109436 [Gene_View]  chr4:140620782-140756317 [Contig_View]  TBC1D9 [Vega]
ICGC DataPortalENSG00000109436
TCGA cBioPortalTBC1D9
AceView (NCBI)TBC1D9
Genatlas (Paris)TBC1D9
WikiGenes23158
SOURCE (Princeton)TBC1D9
Genetics Home Reference (NIH)TBC1D9
Genomic and cartography
GoldenPath hg38 (UCSC)TBC1D9  -     chr4:140620782-140756317 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBC1D9  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblTBC1D9 - 4q31.21 [CytoView hg19]  TBC1D9 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBITBC1D9 [Mapview hg19]  TBC1D9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB020689 AB449892 AF131785 AI439646 AK127020
RefSeq transcript (Entrez)NM_015130
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBC1D9
Cluster EST : UnigeneHs.595450 [ NCBI ]
CGAP (NCI)Hs.595450
Alternative Splicing GalleryENSG00000109436
Gene ExpressionTBC1D9 [ NCBI-GEO ]   TBC1D9 [ EBI - ARRAY_EXPRESS ]   TBC1D9 [ SEEK ]   TBC1D9 [ MEM ]
Gene Expression Viewer (FireBrowse)TBC1D9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23158
GTEX Portal (Tissue expression)TBC1D9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZT07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZT07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZT07
Splice isoforms : SwissVarQ6ZT07
PhosPhoSitePlusQ6ZT07
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)    TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom    GRAM    Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)GRAM (PF02893)    RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam02893    pfam00566   
Domain families : Smart (EMBL)GRAM (SM00568)  TBC (SM00164)  
Conserved Domain (NCBI)TBC1D9
DMDM Disease mutations23158
Blocks (Seattle)TBC1D9
SuperfamilyQ6ZT07
Human Protein AtlasENSG00000109436
Peptide AtlasQ6ZT07
HPRD11115
IPIIPI00848032   IPI00169407   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZT07
IntAct (EBI)Q6ZT07
FunCoupENSG00000109436
BioGRIDTBC1D9
STRING (EMBL)TBC1D9
ZODIACTBC1D9
Ontologies - Pathways
QuickGOQ6ZT07
Ontology : AmiGOGTPase activator activity  calcium ion binding  protein binding  intracellular  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  calcium ion binding  protein binding  intracellular  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkTBC1D9
Atlas of Cancer Signalling NetworkTBC1D9
Wikipedia pathwaysTBC1D9
Orthology - Evolution
OrthoDB23158
GeneTree (enSembl)ENSG00000109436
Phylogenetic Trees/Animal Genes : TreeFamTBC1D9
HOVERGENQ6ZT07
HOGENOMQ6ZT07
Homologs : HomoloGeneTBC1D9
Homology/Alignments : Family Browser (UCSC)TBC1D9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBC1D9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBC1D9
dbVarTBC1D9
ClinVarTBC1D9
1000_GenomesTBC1D9 
Exome Variant ServerTBC1D9
ExAC (Exome Aggregation Consortium)TBC1D9 (select the gene name)
Genetic variants : HAPMAP23158
Genomic Variants (DGV)TBC1D9 [DGVbeta]
DECIPHERTBC1D9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBC1D9 
Mutations
ICGC Data PortalTBC1D9 
TCGA Data PortalTBC1D9 
Broad Tumor PortalTBC1D9
OASIS PortalTBC1D9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBC1D9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBC1D9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBC1D9
DgiDB (Drug Gene Interaction Database)TBC1D9
DoCM (Curated mutations)TBC1D9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBC1D9 (select a term)
intoGenTBC1D9
Cancer3DTBC1D9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTBC1D9
Genetic Testing Registry TBC1D9
NextProtQ6ZT07 [Medical]
TSGene23158
GENETestsTBC1D9
Huge Navigator TBC1D9 [HugePedia]
snp3D : Map Gene to Disease23158
BioCentury BCIQTBC1D9
ClinGenTBC1D9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23158
Chemical/Pharm GKB GenePA128394607
Clinical trialTBC1D9
Miscellaneous
canSAR (ICR)TBC1D9 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBC1D9
EVEXTBC1D9
GoPubMedTBC1D9
iHOPTBC1D9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:40:24 CEST 2017

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