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TBCA (tubulin folding cofactor A)

Identity

Alias_namestubulin-specific chaperone a
Other alias-
HGNC (Hugo) TBCA
LocusID (NCBI) 6902
Atlas_Id 74540
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 77691169 and ends at 77776361 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBCA   11579
Cards
Entrez_Gene (NCBI)TBCA  6902  tubulin folding cofactor A
Aliases
GeneCards (Weizmann)TBCA
Ensembl hg19 (Hinxton)ENSG00000171530 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171530 [Gene_View]  chr5:77691169-77776361 [Contig_View]  TBCA [Vega]
ICGC DataPortalENSG00000171530
TCGA cBioPortalTBCA
AceView (NCBI)TBCA
Genatlas (Paris)TBCA
WikiGenes6902
SOURCE (Princeton)TBCA
Genetics Home Reference (NIH)TBCA
Genomic and cartography
GoldenPath hg38 (UCSC)TBCA  -     chr5:77691169-77776361 -  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBCA  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblTBCA - 5q14.1 [CytoView hg19]  TBCA - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBITBCA [Mapview hg19]  TBCA [Mapview hg38]
OMIM610058   
Gene and transcription
Genbank (Entrez)AF038952 AK300031 AK312207 BC018210 BC067837
RefSeq transcript (Entrez)NM_001297738 NM_001297740 NM_004607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBCA
Cluster EST : UnigeneHs.661401 [ NCBI ]
CGAP (NCI)Hs.661401
Alternative Splicing GalleryENSG00000171530
Gene ExpressionTBCA [ NCBI-GEO ]   TBCA [ EBI - ARRAY_EXPRESS ]   TBCA [ SEEK ]   TBCA [ MEM ]
Gene Expression Viewer (FireBrowse)TBCA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6902
GTEX Portal (Tissue expression)TBCA
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75347   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75347  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75347
Splice isoforms : SwissVarO75347
PhosPhoSitePlusO75347
Domains : Interpro (EBI)TBCA   
Domain families : Pfam (Sanger)TBCA (PF02970)   
Domain families : Pfam (NCBI)pfam02970   
Domain structure : Prodom (Prabi Lyon)CofA_tubulin_bd (PD010430)   
Conserved Domain (NCBI)TBCA
DMDM Disease mutations6902
Blocks (Seattle)TBCA
PDB (SRS)1H7C   
PDB (PDBSum)1H7C   
PDB (IMB)1H7C   
PDB (RSDB)1H7C   
Structural Biology KnowledgeBase1H7C   
SCOP (Structural Classification of Proteins)1H7C   
CATH (Classification of proteins structures)1H7C   
SuperfamilyO75347
Human Protein AtlasENSG00000171530
Peptide AtlasO75347
HPRD18166
IPIIPI00217236   IPI00909626   IPI00973811   IPI00974205   IPI00981739   IPI00973785   IPI00974546   
Protein Interaction databases
DIP (DOE-UCLA)O75347
IntAct (EBI)O75347
FunCoupENSG00000171530
BioGRIDTBCA
STRING (EMBL)TBCA
ZODIACTBCA
Ontologies - Pathways
QuickGOO75347
Ontology : AmiGORNA binding  protein binding  nucleolus  cytoplasm  microtubule  protein folding  tubulin complex assembly  post-chaperonin tubulin folding pathway  microtubule cytoskeleton  beta-tubulin binding  chaperone binding  extracellular exosome  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  cytoplasm  microtubule  protein folding  tubulin complex assembly  post-chaperonin tubulin folding pathway  microtubule cytoskeleton  beta-tubulin binding  chaperone binding  extracellular exosome  
NDEx NetworkTBCA
Atlas of Cancer Signalling NetworkTBCA
Wikipedia pathwaysTBCA
Orthology - Evolution
OrthoDB6902
GeneTree (enSembl)ENSG00000171530
Phylogenetic Trees/Animal Genes : TreeFamTBCA
HOVERGENO75347
HOGENOMO75347
Homologs : HomoloGeneTBCA
Homology/Alignments : Family Browser (UCSC)TBCA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBCA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBCA
dbVarTBCA
ClinVarTBCA
1000_GenomesTBCA 
Exome Variant ServerTBCA
ExAC (Exome Aggregation Consortium)TBCA (select the gene name)
Genetic variants : HAPMAP6902
Genomic Variants (DGV)TBCA [DGVbeta]
DECIPHERTBCA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBCA 
Mutations
ICGC Data PortalTBCA 
TCGA Data PortalTBCA 
Broad Tumor PortalTBCA
OASIS PortalTBCA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBCA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBCA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBCA
DgiDB (Drug Gene Interaction Database)TBCA
DoCM (Curated mutations)TBCA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBCA (select a term)
intoGenTBCA
Cancer3DTBCA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610058   
Orphanet
MedgenTBCA
Genetic Testing Registry TBCA
NextProtO75347 [Medical]
TSGene6902
GENETestsTBCA
Target ValidationTBCA
Huge Navigator TBCA [HugePedia]
snp3D : Map Gene to Disease6902
BioCentury BCIQTBCA
ClinGenTBCA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6902
Chemical/Pharm GKB GenePA36343
Clinical trialTBCA
Miscellaneous
canSAR (ICR)TBCA (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBCA
EVEXTBCA
GoPubMedTBCA
iHOPTBCA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:58 CEST 2017

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