Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TBCD (tubulin folding cofactor D)

Identity

Alias_namestubulin-specific chaperone d
Other aliasSSD-1
tfcD
HGNC (Hugo) TBCD
LocusID (NCBI) 6904
Atlas_Id 74542
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80709940 and ends at 80901062 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BAIAP2 (17q25.3) / TBCD (17q25.3)NPLOC4 (17q25.3) / TBCD (17q25.3)TBCD (17q25.3) / AKR1B1 (7q33)
TBCD (17q25.3) / ASPSCR1 (17q25.3)TBCD (17q25.3) / FOXK2 (17q25.3)TBCD (17q25.3) / NEAT1 (11q13.1)
TBCD (17q25.3) / NFIX (19p13.2)TBCD (17q25.3) / RPTOR (17q25.3)TBCD (17q25.3) / SCARA5 (8p21.1)
TBCD (17q25.3) / SGCD (5q33.3)TBCD (17q25.3) / SLC9A3R1 (17q25.1)TBCD (17q25.3) / TBCD (17q25.3)
TBCD SLC9A3R1TBCD NFIX

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBCD   11581
Cards
Entrez_Gene (NCBI)TBCD  6904  tubulin folding cofactor D
AliasesSSD-1; tfcD
GeneCards (Weizmann)TBCD
Ensembl hg19 (Hinxton)ENSG00000141556 [Gene_View]  chr17:80709940-80901062 [Contig_View]  TBCD [Vega]
Ensembl hg38 (Hinxton)ENSG00000141556 [Gene_View]  chr17:80709940-80901062 [Contig_View]  TBCD [Vega]
ICGC DataPortalENSG00000141556
TCGA cBioPortalTBCD
AceView (NCBI)TBCD
Genatlas (Paris)TBCD
WikiGenes6904
SOURCE (Princeton)TBCD
Genetics Home Reference (NIH)TBCD
Genomic and cartography
GoldenPath hg19 (UCSC)TBCD  -     chr17:80709940-80901062 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TBCD  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblTBCD - 17q25.3 [CytoView hg19]  TBCD - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBITBCD [Mapview hg19]  TBCD [Mapview hg38]
OMIM604649   
Gene and transcription
Genbank (Entrez)AA421669 AB023205 AF052173 AF193042 AJ006417
RefSeq transcript (Entrez)NM_001033052 NM_005993
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_011721 NT_010663 NT_187612 NW_004929408
Consensus coding sequences : CCDS (NCBI)TBCD
Cluster EST : UnigeneHs.464391 [ NCBI ]
CGAP (NCI)Hs.464391
Alternative Splicing GalleryENSG00000141556
Gene ExpressionTBCD [ NCBI-GEO ]   TBCD [ EBI - ARRAY_EXPRESS ]   TBCD [ SEEK ]   TBCD [ MEM ]
Gene Expression Viewer (FireBrowse)TBCD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6904
GTEX Portal (Tissue expression)TBCD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTW9
Splice isoforms : SwissVarQ9BTW9
PhosPhoSitePlusQ9BTW9
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Tubulin_specific_chaperoneD_C   
Domain families : Pfam (Sanger)TFCD_C (PF12612)   
Domain families : Pfam (NCBI)pfam12612   
Conserved Domain (NCBI)TBCD
DMDM Disease mutations6904
Blocks (Seattle)TBCD
SuperfamilyQ9BTW9
Human Protein AtlasENSG00000141556
Peptide AtlasQ9BTW9
HPRD05227
IPIIPI00396203   IPI00719188   IPI00030774   IPI00386607   IPI01013392   IPI00941229   IPI01025989   IPI00443010   IPI00816088   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTW9
IntAct (EBI)Q9BTW9
FunCoupENSG00000141556
BioGRIDTBCD
STRING (EMBL)TBCD
ZODIACTBCD
Ontologies - Pathways
QuickGOQ9BTW9
Ontology : AmiGOmicrotubule cytoskeleton organization  GTPase activator activity  GTPase activator activity  protein binding  cytoplasm  microtubule  adherens junction  adherens junction  bicellular tight junction  bicellular tight junction  protein folding  protein folding  post-chaperonin tubulin folding pathway  negative regulation of cell-substrate adhesion  lateral plasma membrane  lateral plasma membrane  negative regulation of microtubule polymerization  adherens junction assembly  adherens junction assembly  positive regulation of GTPase activity  positive regulation of GTPase activity  positive regulation of GTPase activity  cellular protein metabolic process  beta-tubulin binding  'de novo' posttranslational protein folding  chaperone binding  bicellular tight junction assembly  bicellular tight junction assembly  tubulin complex biogenesis  
Ontology : EGO-EBImicrotubule cytoskeleton organization  GTPase activator activity  GTPase activator activity  protein binding  cytoplasm  microtubule  adherens junction  adherens junction  bicellular tight junction  bicellular tight junction  protein folding  protein folding  post-chaperonin tubulin folding pathway  negative regulation of cell-substrate adhesion  lateral plasma membrane  lateral plasma membrane  negative regulation of microtubule polymerization  adherens junction assembly  adherens junction assembly  positive regulation of GTPase activity  positive regulation of GTPase activity  positive regulation of GTPase activity  cellular protein metabolic process  beta-tubulin binding  'de novo' posttranslational protein folding  chaperone binding  bicellular tight junction assembly  bicellular tight junction assembly  tubulin complex biogenesis  
NDEx NetworkTBCD
Atlas of Cancer Signalling NetworkTBCD
Wikipedia pathwaysTBCD
Orthology - Evolution
OrthoDB6904
GeneTree (enSembl)ENSG00000141556
Phylogenetic Trees/Animal Genes : TreeFamTBCD
HOVERGENQ9BTW9
HOGENOMQ9BTW9
Homologs : HomoloGeneTBCD
Homology/Alignments : Family Browser (UCSC)TBCD
Gene fusions - Rearrangements
Fusion: TCGATBCD SLC9A3R1
Fusion: TCGATBCD NFIX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBCD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBCD
dbVarTBCD
ClinVarTBCD
1000_GenomesTBCD 
Exome Variant ServerTBCD
ExAC (Exome Aggregation Consortium)TBCD (select the gene name)
Genetic variants : HAPMAP6904
Genomic Variants (DGV)TBCD [DGVbeta]
DECIPHER (Syndromes)17:80709940-80901062  ENSG00000141556
CONAN: Copy Number AnalysisTBCD 
Mutations
ICGC Data PortalTBCD 
TCGA Data PortalTBCD 
Broad Tumor PortalTBCD
OASIS PortalTBCD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBCD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBCD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBCD
DgiDB (Drug Gene Interaction Database)TBCD
DoCM (Curated mutations)TBCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBCD (select a term)
intoGenTBCD
Cancer3DTBCD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604649   
Orphanet
MedgenTBCD
Genetic Testing Registry TBCD
NextProtQ9BTW9 [Medical]
TSGene6904
GENETestsTBCD
Huge Navigator TBCD [HugePedia]
snp3D : Map Gene to Disease6904
BioCentury BCIQTBCD
ClinGenTBCD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6904
Chemical/Pharm GKB GenePA36345
Clinical trialTBCD
Miscellaneous
canSAR (ICR)TBCD (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBCD
EVEXTBCD
GoPubMedTBCD
iHOPTBCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:34 CET 2017

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