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TBCEL (tubulin folding cofactor E-like)

Identity

Alias_namesLRRC35
leucine rich repeat containing 35
tubulin-specific chaperone e-like
Alias_symbol (synonym)MGC10233
Other aliasEl
HGNC (Hugo) TBCEL
LocusID (NCBI) 219899
Atlas_Id 54016
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 120894803 and ends at 120960354 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MRPL18 (6q25.3) / TBCEL (11q23.3)SORL1 (11q24.1) / TBCEL (11q23.3)TBCEL (11q23.3) / TECTA (11q23.3)
TECTA (11q23.3) / TBCEL (11q23.3)TECTA 11q23.3 / TBCEL 11q23.3SORL1 11q24.1 / TBCEL 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBCEL   28115
Cards
Entrez_Gene (NCBI)TBCEL  219899  tubulin folding cofactor E-like
AliasesEl; LRRC35
GeneCards (Weizmann)TBCEL
Ensembl hg19 (Hinxton)ENSG00000154114 [Gene_View]  chr11:120894803-120960354 [Contig_View]  TBCEL [Vega]
Ensembl hg38 (Hinxton)ENSG00000154114 [Gene_View]  chr11:120894803-120960354 [Contig_View]  TBCEL [Vega]
ICGC DataPortalENSG00000154114
TCGA cBioPortalTBCEL
AceView (NCBI)TBCEL
Genatlas (Paris)TBCEL
WikiGenes219899
SOURCE (Princeton)TBCEL
Genetics Home Reference (NIH)TBCEL
Genomic and cartography
GoldenPath hg19 (UCSC)TBCEL  -     chr11:120894803-120960354 +  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TBCEL  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblTBCEL - 11q23.3 [CytoView hg19]  TBCEL - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBITBCEL [Mapview hg19]  TBCEL [Mapview hg38]
OMIM610451   
Gene and transcription
Genbank (Entrez)AI128257 AK024239 AK095817 AK295673 AK313324
RefSeq transcript (Entrez)NM_001130047 NM_152715
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)TBCEL
Cluster EST : UnigeneHs.720282 [ NCBI ]
CGAP (NCI)Hs.720282
Alternative Splicing GalleryENSG00000154114
Gene ExpressionTBCEL [ NCBI-GEO ]   TBCEL [ EBI - ARRAY_EXPRESS ]   TBCEL [ SEEK ]   TBCEL [ MEM ]
Gene Expression Viewer (FireBrowse)TBCEL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219899
GTEX Portal (Tissue expression)TBCEL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5QJ74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5QJ74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5QJ74
Splice isoforms : SwissVarQ5QJ74
PhosPhoSitePlusQ5QJ74
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)L_dom-like    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)Ubiquitin_2 (PF14560)   
Domain families : Pfam (NCBI)pfam14560   
Conserved Domain (NCBI)TBCEL
DMDM Disease mutations219899
Blocks (Seattle)TBCEL
SuperfamilyQ5QJ74
Human Protein AtlasENSG00000154114
Peptide AtlasQ5QJ74
HPRD11302
IPIIPI00166956   IPI00910784   IPI00973870   IPI00902999   IPI00980351   IPI00982328   IPI00981498   
Protein Interaction databases
DIP (DOE-UCLA)Q5QJ74
IntAct (EBI)Q5QJ74
FunCoupENSG00000154114
BioGRIDTBCEL
STRING (EMBL)TBCEL
ZODIACTBCEL
Ontologies - Pathways
QuickGOQ5QJ74
Ontology : AmiGOprotein binding  cytoplasm  cytoskeleton  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoskeleton  
NDEx NetworkTBCEL
Atlas of Cancer Signalling NetworkTBCEL
Wikipedia pathwaysTBCEL
Orthology - Evolution
OrthoDB219899
GeneTree (enSembl)ENSG00000154114
Phylogenetic Trees/Animal Genes : TreeFamTBCEL
HOVERGENQ5QJ74
HOGENOMQ5QJ74
Homologs : HomoloGeneTBCEL
Homology/Alignments : Family Browser (UCSC)TBCEL
Gene fusions - Rearrangements
Fusion : MitelmanSORL1/TBCEL [11q24.1/11q23.3]  [t(11;11)(q23;q24)]  
Fusion: TCGASORL1 11q24.1 TBCEL 11q23.3 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBCEL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBCEL
dbVarTBCEL
ClinVarTBCEL
1000_GenomesTBCEL 
Exome Variant ServerTBCEL
ExAC (Exome Aggregation Consortium)TBCEL (select the gene name)
Genetic variants : HAPMAP219899
Genomic Variants (DGV)TBCEL [DGVbeta]
DECIPHER (Syndromes)11:120894803-120960354  ENSG00000154114
CONAN: Copy Number AnalysisTBCEL 
Mutations
ICGC Data PortalTBCEL 
TCGA Data PortalTBCEL 
Broad Tumor PortalTBCEL
OASIS PortalTBCEL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBCEL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBCEL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBCEL
DgiDB (Drug Gene Interaction Database)TBCEL
DoCM (Curated mutations)TBCEL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBCEL (select a term)
intoGenTBCEL
Cancer3DTBCEL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610451   
Orphanet
MedgenTBCEL
Genetic Testing Registry TBCEL
NextProtQ5QJ74 [Medical]
TSGene219899
GENETestsTBCEL
Huge Navigator TBCEL [HugePedia]
snp3D : Map Gene to Disease219899
BioCentury BCIQTBCEL
ClinGenTBCEL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219899
Chemical/Pharm GKB GenePA162405374
Clinical trialTBCEL
Miscellaneous
canSAR (ICR)TBCEL (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBCEL
EVEXTBCEL
GoPubMedTBCEL
iHOPTBCEL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:57 CEST 2017

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