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TBL1Y (transducin (beta)-like 1, Y-linked)

Identity

Alias_namestransducin (beta)-like 1, Y-linked
Alias_symbol (synonym)TBL1
Other alias
HGNC (Hugo) TBL1Y
LocusID (NCBI) 90665
Atlas_Id 74546
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 6778727 and ends at 6959724 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GATA6 (18q11.2) / TBL1Y (Yp11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBL1Y   18502
Cards
Entrez_Gene (NCBI)TBL1Y  90665  transducin (beta)-like 1, Y-linked
AliasesTBL1
GeneCards (Weizmann)TBL1Y
Ensembl hg19 (Hinxton)ENSG00000092377 [Gene_View]  chrY:6778727-6959724 [Contig_View]  TBL1Y [Vega]
Ensembl hg38 (Hinxton)ENSG00000092377 [Gene_View]  chrY:6778727-6959724 [Contig_View]  TBL1Y [Vega]
ICGC DataPortalENSG00000092377
TCGA cBioPortalTBL1Y
AceView (NCBI)TBL1Y
Genatlas (Paris)TBL1Y
WikiGenes90665
SOURCE (Princeton)TBL1Y
Genetics Home Reference (NIH)TBL1Y
Genomic and cartography
GoldenPath hg19 (UCSC)TBL1Y  -     chrY:6778727-6959724 +  Yp11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TBL1Y  -     Yp11.2   [Description]    (hg38-Dec_2013)
EnsemblTBL1Y - Yp11.2 [CytoView hg19]  TBL1Y - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITBL1Y [Mapview hg19]  TBL1Y [Mapview hg38]
OMIM400033   
Gene and transcription
Genbank (Entrez)AF332220 AF332221 AF332222 AK056903 AK298210
RefSeq transcript (Entrez)NM_033284 NM_134258 NM_134259
RefSeq genomic (Entrez)NC_000024 NT_011896
Consensus coding sequences : CCDS (NCBI)TBL1Y
Cluster EST : UnigeneHs.664560 [ NCBI ]
CGAP (NCI)Hs.664560
Alternative Splicing GalleryENSG00000092377
Gene ExpressionTBL1Y [ NCBI-GEO ]   TBL1Y [ EBI - ARRAY_EXPRESS ]   TBL1Y [ SEEK ]   TBL1Y [ MEM ]
Gene Expression Viewer (FireBrowse)TBL1Y [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90665
GTEX Portal (Tissue expression)TBL1Y
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ87
Splice isoforms : SwissVarQ9BQ87
PhosPhoSitePlusQ9BQ87
Domaine pattern : Prosite (Expaxy)LISH (PS50896)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    LisH    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)LisH (PF08513)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08513    pfam00400   
Domain families : Smart (EMBL)LisH (SM00667)  WD40 (SM00320)  
Conserved Domain (NCBI)TBL1Y
DMDM Disease mutations90665
Blocks (Seattle)TBL1Y
SuperfamilyQ9BQ87
Human Protein AtlasENSG00000092377
Peptide AtlasQ9BQ87
HPRD15962
IPIIPI00020873   IPI01012500   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ87
IntAct (EBI)Q9BQ87
FunCoupENSG00000092377
BioGRIDTBL1Y
STRING (EMBL)TBL1Y
ZODIACTBL1Y
Ontologies - Pathways
QuickGOQ9BQ87
Ontology : AmiGOhistone deacetylase complex  chromatin binding  transcription corepressor activity  transcription factor complex  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  histone deacetylation  proteasome-mediated ubiquitin-dependent protein catabolic process  response to estrogen  transcription regulatory region DNA binding  fat cell differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIhistone deacetylase complex  chromatin binding  transcription corepressor activity  transcription factor complex  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  histone deacetylation  proteasome-mediated ubiquitin-dependent protein catabolic process  response to estrogen  transcription regulatory region DNA binding  fat cell differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGWnt signaling pathway   
NDEx NetworkTBL1Y
Atlas of Cancer Signalling NetworkTBL1Y
Wikipedia pathwaysTBL1Y
Orthology - Evolution
OrthoDB90665
GeneTree (enSembl)ENSG00000092377
Phylogenetic Trees/Animal Genes : TreeFamTBL1Y
HOVERGENQ9BQ87
HOGENOMQ9BQ87
Homologs : HomoloGeneTBL1Y
Homology/Alignments : Family Browser (UCSC)TBL1Y
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBL1Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBL1Y
dbVarTBL1Y
ClinVarTBL1Y
1000_GenomesTBL1Y 
Exome Variant ServerTBL1Y
ExAC (Exome Aggregation Consortium)TBL1Y (select the gene name)
Genetic variants : HAPMAP90665
Genomic Variants (DGV)TBL1Y [DGVbeta]
DECIPHER (Syndromes)Y:6778727-6959724  ENSG00000092377
CONAN: Copy Number AnalysisTBL1Y 
Mutations
ICGC Data PortalTBL1Y 
TCGA Data PortalTBL1Y 
Broad Tumor PortalTBL1Y
OASIS PortalTBL1Y [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBL1Y  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBL1Y
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBL1Y
DgiDB (Drug Gene Interaction Database)TBL1Y
DoCM (Curated mutations)TBL1Y (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBL1Y (select a term)
intoGenTBL1Y
Cancer3DTBL1Y(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400033   
Orphanet
MedgenTBL1Y
Genetic Testing Registry TBL1Y
NextProtQ9BQ87 [Medical]
TSGene90665
GENETestsTBL1Y
Huge Navigator TBL1Y [HugePedia]
snp3D : Map Gene to Disease90665
BioCentury BCIQTBL1Y
ClinGenTBL1Y
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90665
Chemical/Pharm GKB GenePA38564
Clinical trialTBL1Y
Miscellaneous
canSAR (ICR)TBL1Y (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBL1Y
EVEXTBL1Y
GoPubMedTBL1Y
iHOPTBL1Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:35 CET 2017

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