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TBL1Y (transducin beta like 1 Y-linked)

Identity

Alias (NCBI)DFNY2
TBL1
HGNC (Hugo) TBL1Y
HGNC Alias symbTBL1
HGNC Previous nametransducin (beta)-like 1, Y-linked
LocusID (NCBI) 90665
Atlas_Id 74546
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 6910686 and ends at 7091683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GATA6 (18q11.2) / TBL1Y (Yp11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBL1Y   18502
Cards
Entrez_Gene (NCBI)TBL1Y    transducin beta like 1 Y-linked
AliasesDFNY2; TBL1
GeneCards (Weizmann)TBL1Y
Ensembl hg19 (Hinxton)ENSG00000092377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092377 [Gene_View]  ENSG00000092377 [Sequence]  chrY:6910686-7091683 [Contig_View]  TBL1Y [Vega]
ICGC DataPortalENSG00000092377
TCGA cBioPortalTBL1Y
AceView (NCBI)TBL1Y
Genatlas (Paris)TBL1Y
SOURCE (Princeton)TBL1Y
Genetics Home Reference (NIH)TBL1Y
Genomic and cartography
GoldenPath hg38 (UCSC)TBL1Y  -     chrY:6910686-7091683 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBL1Y  -     Yp11.2   [Description]    (hg19-Feb_2009)
GoldenPathTBL1Y - Yp11.2 [CytoView hg19]  TBL1Y - Yp11.2 [CytoView hg38]
ImmunoBaseENSG00000092377
Genome Data Viewer NCBITBL1Y [Mapview hg19]  
OMIM400033   400047   
Gene and transcription
Genbank (Entrez)AF332220 AF332221 AF332222 AK056903 AK298210
RefSeq transcript (Entrez)NM_033284 NM_134258 NM_134259
Consensus coding sequences : CCDS (NCBI)TBL1Y
Gene ExpressionTBL1Y [ NCBI-GEO ]   TBL1Y [ EBI - ARRAY_EXPRESS ]   TBL1Y [ SEEK ]   TBL1Y [ MEM ]
Gene Expression Viewer (FireBrowse)TBL1Y [ Firebrowse - Broad ]
GenevisibleExpression of TBL1Y in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90665
GTEX Portal (Tissue expression)TBL1Y
Human Protein AtlasENSG00000092377-TBL1Y [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ87
PhosPhoSitePlusQ9BQ87
Domaine pattern : Prosite (Expaxy)LISH (PS50896)    WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    LisH    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)LisH (PF08513)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08513    pfam00400   
Domain families : Smart (EMBL)LisH (SM00667)  WD40 (SM00320)  
Conserved Domain (NCBI)TBL1Y
SuperfamilyQ9BQ87
AlphaFold pdb e-kbQ9BQ87   
Human Protein Atlas [tissue]ENSG00000092377-TBL1Y [tissue]
HPRD15962
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ87
IntAct (EBI)Q9BQ87
BioGRIDTBL1Y
STRING (EMBL)TBL1Y
ZODIACTBL1Y
Ontologies - Pathways
QuickGOQ9BQ87
Ontology : AmiGOhistone deacetylase complex  transcription corepressor activity  protein binding  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  histone deacetylation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIhistone deacetylase complex  transcription corepressor activity  protein binding  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  histone deacetylation  negative regulation of transcription, DNA-templated  
Pathways : KEGGWnt signaling pathway   
NDEx NetworkTBL1Y
Atlas of Cancer Signalling NetworkTBL1Y
Wikipedia pathwaysTBL1Y
Orthology - Evolution
OrthoDB90665
GeneTree (enSembl)ENSG00000092377
Phylogenetic Trees/Animal Genes : TreeFamTBL1Y
Homologs : HomoloGeneTBL1Y
Homology/Alignments : Family Browser (UCSC)TBL1Y
Gene fusions - Rearrangements
Fusion : QuiverTBL1Y
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBL1Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBL1Y
dbVarTBL1Y
ClinVarTBL1Y
MonarchTBL1Y
1000_GenomesTBL1Y 
Exome Variant ServerTBL1Y
GNOMAD BrowserENSG00000092377
Varsome BrowserTBL1Y
ACMGTBL1Y variants
VarityQ9BQ87
Genomic Variants (DGV)TBL1Y [DGVbeta]
DECIPHERTBL1Y [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBL1Y 
Mutations
ICGC Data PortalTBL1Y 
TCGA Data PortalTBL1Y 
Broad Tumor PortalTBL1Y
OASIS PortalTBL1Y [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBL1Y  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBL1Y
Mutations and Diseases : HGMDTBL1Y
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBL1Y
DgiDB (Drug Gene Interaction Database)TBL1Y
DoCM (Curated mutations)TBL1Y
CIViC (Clinical Interpretations of Variants in Cancer)TBL1Y
Cancer3DTBL1Y
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400033    400047   
Orphanet
DisGeNETTBL1Y
MedgenTBL1Y
Genetic Testing Registry TBL1Y
NextProtQ9BQ87 [Medical]
GENETestsTBL1Y
Target ValidationTBL1Y
Huge Navigator TBL1Y [HugePedia]
ClinGenTBL1Y
Clinical trials, drugs, therapy
MyCancerGenomeTBL1Y
Protein Interactions : CTDTBL1Y
Pharm GKB GenePA38564
PharosQ9BQ87
Clinical trialTBL1Y
Miscellaneous
canSAR (ICR)TBL1Y
HarmonizomeTBL1Y
DataMed IndexTBL1Y
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBL1Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:24:59 CEST 2021

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