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TBL2 (transducin beta like 2)

Identity

Alias_namestransducin (beta)-like 2
Alias_symbol (synonym)WS-betaTRP
WBSCR13
DKFZP43N024
Other alias
HGNC (Hugo) TBL2
LocusID (NCBI) 26608
Atlas_Id 53603
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73568946 and ends at 73578683 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBL2   11586
Cards
Entrez_Gene (NCBI)TBL2  26608  transducin beta like 2
AliasesWBSCR13; WS-betaTRP
GeneCards (Weizmann)TBL2
Ensembl hg19 (Hinxton)ENSG00000106638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106638 [Gene_View]  chr7:73568946-73578683 [Contig_View]  TBL2 [Vega]
ICGC DataPortalENSG00000106638
TCGA cBioPortalTBL2
AceView (NCBI)TBL2
Genatlas (Paris)TBL2
WikiGenes26608
SOURCE (Princeton)TBL2
Genetics Home Reference (NIH)TBL2
Genomic and cartography
GoldenPath hg38 (UCSC)TBL2  -     chr7:73568946-73578683 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBL2  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblTBL2 - 7q11.23 [CytoView hg19]  TBL2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBITBL2 [Mapview hg19]  TBL2 [Mapview hg38]
OMIM605842   
Gene and transcription
Genbank (Entrez)AF056183 AF097484 AK000536 AK026529 AK074619
RefSeq transcript (Entrez)NM_012453 NM_032988
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBL2
Cluster EST : UnigeneHs.647044 [ NCBI ]
CGAP (NCI)Hs.647044
Alternative Splicing GalleryENSG00000106638
Gene ExpressionTBL2 [ NCBI-GEO ]   TBL2 [ EBI - ARRAY_EXPRESS ]   TBL2 [ SEEK ]   TBL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TBL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26608
GTEX Portal (Tissue expression)TBL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4P3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4P3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4P3
Splice isoforms : SwissVarQ9Y4P3
PhosPhoSitePlusQ9Y4P3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)TBL2
DMDM Disease mutations26608
Blocks (Seattle)TBL2
SuperfamilyQ9Y4P3
Human Protein AtlasENSG00000106638
Peptide AtlasQ9Y4P3
HPRD09319
IPIIPI00000948   IPI00927756   IPI00927103   IPI00926878   IPI00926666   IPI00927538   IPI00927278   IPI00927064   IPI00925079   IPI00924842   IPI00924474   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4P3
IntAct (EBI)Q9Y4P3
FunCoupENSG00000106638
BioGRIDTBL2
STRING (EMBL)TBL2
ZODIACTBL2
Ontologies - Pathways
QuickGOQ9Y4P3
Ontology : AmiGORNA binding  endoplasmic reticulum  protein kinase binding  integral component of endoplasmic reticulum membrane  endoplasmic reticulum unfolded protein response  translation initiation factor binding  cellular response to glucose starvation  phosphoprotein binding  cellular response to hypoxia  
Ontology : EGO-EBIRNA binding  endoplasmic reticulum  protein kinase binding  integral component of endoplasmic reticulum membrane  endoplasmic reticulum unfolded protein response  translation initiation factor binding  cellular response to glucose starvation  phosphoprotein binding  cellular response to hypoxia  
NDEx NetworkTBL2
Atlas of Cancer Signalling NetworkTBL2
Wikipedia pathwaysTBL2
Orthology - Evolution
OrthoDB26608
GeneTree (enSembl)ENSG00000106638
Phylogenetic Trees/Animal Genes : TreeFamTBL2
HOVERGENQ9Y4P3
HOGENOMQ9Y4P3
Homologs : HomoloGeneTBL2
Homology/Alignments : Family Browser (UCSC)TBL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBL2
dbVarTBL2
ClinVarTBL2
1000_GenomesTBL2 
Exome Variant ServerTBL2
ExAC (Exome Aggregation Consortium)TBL2 (select the gene name)
Genetic variants : HAPMAP26608
Genomic Variants (DGV)TBL2 [DGVbeta]
DECIPHERTBL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBL2 
Mutations
ICGC Data PortalTBL2 
TCGA Data PortalTBL2 
Broad Tumor PortalTBL2
OASIS PortalTBL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBL2
DgiDB (Drug Gene Interaction Database)TBL2
DoCM (Curated mutations)TBL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBL2 (select a term)
intoGenTBL2
Cancer3DTBL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605842   
Orphanet145   
MedgenTBL2
Genetic Testing Registry TBL2
NextProtQ9Y4P3 [Medical]
TSGene26608
GENETestsTBL2
Target ValidationTBL2
Huge Navigator TBL2 [HugePedia]
snp3D : Map Gene to Disease26608
BioCentury BCIQTBL2
ClinGenTBL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26608
Chemical/Pharm GKB GenePA36350
Clinical trialTBL2
Miscellaneous
canSAR (ICR)TBL2 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBL2
EVEXTBL2
GoPubMedTBL2
iHOPTBL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:58:47 CEST 2017

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