Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TBL3 (transducin beta like 3)

Identity

Alias_namestransducin (beta)-like 3
Alias_symbol (synonym)SAZD
UTP13
Other alias
HGNC (Hugo) TBL3
LocusID (NCBI) 10607
Atlas_Id 74547
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1972063 and ends at 1978750 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBL3   11587
Cards
Entrez_Gene (NCBI)TBL3  10607  transducin beta like 3
AliasesSAZD; UTP13
GeneCards (Weizmann)TBL3
Ensembl hg19 (Hinxton)ENSG00000183751 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183751 [Gene_View]  chr16:1972063-1978750 [Contig_View]  TBL3 [Vega]
ICGC DataPortalENSG00000183751
TCGA cBioPortalTBL3
AceView (NCBI)TBL3
Genatlas (Paris)TBL3
WikiGenes10607
SOURCE (Princeton)TBL3
Genetics Home Reference (NIH)TBL3
Genomic and cartography
GoldenPath hg38 (UCSC)TBL3  -     chr16:1972063-1978750 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBL3  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblTBL3 - 16p13.3 [CytoView hg19]  TBL3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBITBL3 [Mapview hg19]  TBL3 [Mapview hg38]
OMIM605915   
Gene and transcription
Genbank (Entrez)AB209173 AK095076 BC002361 BC007620 BC010231
RefSeq transcript (Entrez)NM_006453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBL3
Cluster EST : UnigeneHs.513267 [ NCBI ]
CGAP (NCI)Hs.513267
Alternative Splicing GalleryENSG00000183751
Gene ExpressionTBL3 [ NCBI-GEO ]   TBL3 [ EBI - ARRAY_EXPRESS ]   TBL3 [ SEEK ]   TBL3 [ MEM ]
Gene Expression Viewer (FireBrowse)TBL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10607
GTEX Portal (Tissue expression)TBL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12788   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12788  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12788
Splice isoforms : SwissVarQ12788
PhosPhoSitePlusQ12788
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    Quino_amine_DH_bsu    SSU_processome_Utp13    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)Utp13 (PF08625)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08625    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)TBL3
DMDM Disease mutations10607
Blocks (Seattle)TBL3
SuperfamilyQ12788
Human Protein AtlasENSG00000183751
Peptide AtlasQ12788
HPRD09327
IPIIPI00477971   
Protein Interaction databases
DIP (DOE-UCLA)Q12788
IntAct (EBI)Q12788
FunCoupENSG00000183751
BioGRIDTBL3
STRING (EMBL)TBL3
ZODIACTBL3
Ontologies - Pathways
QuickGOQ12788
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  rRNA processing  snoRNA binding  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  rRNA processing  snoRNA binding  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkTBL3
Atlas of Cancer Signalling NetworkTBL3
Wikipedia pathwaysTBL3
Orthology - Evolution
OrthoDB10607
GeneTree (enSembl)ENSG00000183751
Phylogenetic Trees/Animal Genes : TreeFamTBL3
HOVERGENQ12788
HOGENOMQ12788
Homologs : HomoloGeneTBL3
Homology/Alignments : Family Browser (UCSC)TBL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBL3
dbVarTBL3
ClinVarTBL3
1000_GenomesTBL3 
Exome Variant ServerTBL3
ExAC (Exome Aggregation Consortium)TBL3 (select the gene name)
Genetic variants : HAPMAP10607
Genomic Variants (DGV)TBL3 [DGVbeta]
DECIPHERTBL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBL3 
Mutations
ICGC Data PortalTBL3 
TCGA Data PortalTBL3 
Broad Tumor PortalTBL3
OASIS PortalTBL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBL3
DgiDB (Drug Gene Interaction Database)TBL3
DoCM (Curated mutations)TBL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBL3 (select a term)
intoGenTBL3
Cancer3DTBL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605915   
Orphanet
MedgenTBL3
Genetic Testing Registry TBL3
NextProtQ12788 [Medical]
TSGene10607
GENETestsTBL3
Target ValidationTBL3
Huge Navigator TBL3 [HugePedia]
snp3D : Map Gene to Disease10607
BioCentury BCIQTBL3
ClinGenTBL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10607
Chemical/Pharm GKB GenePA36351
Clinical trialTBL3
Miscellaneous
canSAR (ICR)TBL3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBL3
EVEXTBL3
GoPubMedTBL3
iHOPTBL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:59 CEST 2017

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